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Merged
javier-gracia-tabuenca-tuni merged 3 commits into from
Jul 2, 2025
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v2.0.4 #50

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7c5aa4b
Enhance domain ID recalculation in validateUsagiFile function by addi…
javier-gracia-tabuenca-tuni Jul 2, 2025
90dcf12
Update version to 2.0.4
javier-gracia-tabuenca-tuni Jul 2, 2025
67e3e12
Merge pull request #49 from FinOMOP/48-adding-measurementobs-as-valid…
javier-gracia-tabuenca-tuni Jul 2, 2025
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2 changes: 1 addition & 1 deletion DESCRIPTION
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Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
Package: ROMOPMappingTools
Title: Tools for Working with OMOP CDM Mappings
Version: 2.0.3
Version: 2.0.4
Authors@R:
person("Javier", "Gracia-Tabuenca", , "javier.graciatabuenca@tuni.fi", role = c("aut", "cre"),
comment = c(ORCID = "0000-0002-2455-0598"))
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4 changes: 4 additions & 0 deletions NEWS.md
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@@ -1,3 +1,7 @@
# ROMOPMappingTools 2.0.4

- Added missing domainId combinations to the usagi file validation

# ROMOPMappingTools 2.0.3

- Added download button to vocabulary and database status tables
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7 changes: 6 additions & 1 deletion R/validateUsagiFile.R
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Expand Up @@ -250,12 +250,17 @@ validateUsagiFile <- function(
# recalculate domains
dplyr::mutate(recalcualted_domainId = dplyr::case_when(
recalcualted_domainId == "Condition Device" ~ "Condition/Device",
recalcualted_domainId == "Condition Drug" ~ "Condition/Drug",
recalcualted_domainId == "Condition Measurement" ~ "Condition/Meas",
recalcualted_domainId == "Condition Observation" ~ "Condition/Obs",
recalcualted_domainId == "Condition Observation" ~ "Condition/Obs",
recalcualted_domainId == "Condition Procedure" ~ "Condition/Procedure",
recalcualted_domainId == "Device Drug" ~ "Device/Drug",
recalcualted_domainId == "Device Observation" ~ "Device/Obs",
recalcualted_domainId == "Device Procedure" ~ "Device/Procedure",
recalcualted_domainId == "Drug Measurement" ~ "Drug/Measurement",
recalcualted_domainId == "Drug Observation" ~ "Drug/Obs",
recalcualted_domainId == "Drug Procedure" ~ "Drug/Procedure",
recalcualted_domainId == "Measurement Observation" ~ "Measurement/Obs",
recalcualted_domainId == "Measurement Procedure" ~ "Meas/Procedure",
recalcualted_domainId == "Observation Procedure" ~ "Obs/Procedure",
TRUE ~ recalcualted_domainId
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