How do I run POSTGAP?

By default, run from the root directory the command:

python POSTGAP.py --disease autism  

Multiple disease names can be provided.

You can also provide a list of EFOs:

python POSTGAP.py --efos EFO_0000196

Or an rsID:

python POSTGAP.py --rsID rs10009124

Or a manually defined variant:

python POSTGAP.py --coords my_variant 1 1234567