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Element Biosciences

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  1. cytoprofiling cytoprofiling Public

    Python and R libraries for processing cytoprofiling datasets from Element Biosciences

    Jupyter Notebook 7

  2. AvidityManuscript2023 AvidityManuscript2023 Public

    Jupyter Notebook 5

  3. bases2fastq-nf bases2fastq-nf Public

    Bases2fastq-nf is a bioinformatics pipeline used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.

    Nextflow 4 3

  4. cells2stats-nf cells2stats-nf Public

    Cells2stats-nf is a bioinformatics pipeline used to assign reads and generate cell statistics from the raw data produced by the Element AVITI24™ System using the Cells2Stats Software.

    Nextflow 2 1

  5. parabricks-nextflow parabricks-nextflow Public

    Forked from clara-parabricks-workflows/parabricks-nextflow

    Accelerated genomics workflows in NextFlow

    Nextflow 2

  6. sentieon-cli-nf sentieon-cli-nf Public

    Elembio Catalyst nextflow wrapper for sentieon-cli

    Groovy 2

Repositories

Showing 10 of 14 repositories
  • cytoprofiling Public

    Python and R libraries for processing cytoprofiling datasets from Element Biosciences

    Elembio/cytoprofiling’s past year of commit activity
    Jupyter Notebook 7 BSD-3-Clause 0 0 1 Updated Apr 8, 2026
  • MultiQC Public Forked from MultiQC/MultiQC

    Aggregate results from bioinformatics analyses across many samples into a single report.

    Elembio/MultiQC’s past year of commit activity
    JavaScript 0 GPL-3.0 662 0 2 Updated Mar 28, 2026
  • configs Public

    custom elembio specific nextflow configs

    Elembio/configs’s past year of commit activity
    Nextflow 0 Apache-2.0 0 0 0 Updated Mar 20, 2026
  • bases2fastq-nf Public

    Bases2fastq-nf is a bioinformatics pipeline used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.

    Elembio/bases2fastq-nf’s past year of commit activity
    Nextflow 4 Apache-2.0 3 0 0 Updated Mar 20, 2026
  • cells2stats-nf Public

    Cells2stats-nf is a bioinformatics pipeline used to assign reads and generate cell statistics from the raw data produced by the Element AVITI24™ System using the Cells2Stats Software.

    Elembio/cells2stats-nf’s past year of commit activity
    Nextflow 2 1 1 0 Updated Mar 11, 2026
  • parabricks-nextflow Public Forked from clara-parabricks-workflows/parabricks-nextflow

    Accelerated genomics workflows in NextFlow

    Elembio/parabricks-nextflow’s past year of commit activity
    Nextflow 2 Apache-2.0 11 0 0 Updated Jan 16, 2026
  • bases2fastq-dx Public

    Bases2fastq-dx is A DNAnexus applet for building a DNAnexus bioinformatics workflow used to demultiplex the raw data produced by the Element AVITI™ System using the Bases2Fastq Software.

    Elembio/bases2fastq-dx’s past year of commit activity
    Shell 0 Apache-2.0 0 0 1 Updated Nov 4, 2025
  • sentieon-cli-nf Public

    Elembio Catalyst nextflow wrapper for sentieon-cli

    Elembio/sentieon-cli-nf’s past year of commit activity
    Groovy 2 BSD-2-Clause 0 0 0 Updated Aug 28, 2025
  • I2C Public

    I2C read and write module

    Elembio/I2C’s past year of commit activity
    0 0 0 0 Updated Aug 26, 2025
  • MultiQC-test-data Public Forked from MultiQC/test-data

    Test data for MultiQC.

    Elembio/MultiQC-test-data’s past year of commit activity
    HTML 0 MIT 157 0 0 Updated Apr 30, 2025
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