Code for "Genomics-enhanced contact tracing enabled the characterization of SARS-CoV-2 transmission chains and their associated infection contexts in the general population during community transmission"

https://www.medrxiv.org/content/10.1101/2025.06.13.25329413v1

• db_clusteranalyse_0.9.5_forGitHub.accdb: Access application used for primary integration of SurvNet-exported data
• graph_and_CER_workflow: Code for constructing the Integrated Case Graph and for computing hypothetical transmission chains
• Script to analyze and visualize the data.R: Code for analyes and plots