This is a repository for a perspective piece on the use of the oligotyping method in microbial ecology research. The publication in Frontiers in Microbiology can be found here: http://journal.frontiersin.org/article/10.3389/fmicb.2017.00365/abstract
This directory contains the Rmd analysis file for this project with rendered pdf and html versions. This directory also contains csv files for the oligotype counts and the sample environmental data.
This directory contains scripts for extracting target gene orthologs from assembled genomes/metagenomes.
This directory contains raw and formatted plots used in the main and supplement.
This directory contains .csv and and .xlsx versions of all tables used in this study.