lesson 4: link to mothur.pbs also broken

[cabler]

I'm still trying to figure out how to do this... How do I change the link to https://github.com/DenefLab/flux-tools/blob/gh-pages/scripts/mothur.pbs ?

[michberr]

Hey @cabler, two things:

1. The lessons are all located in the lessons/ directory. It should be lesson 04. You will need to open the md file in RStudio, change the link, and then re-knit because the website renders the html file not the md. When you commit, there should therefore be two files with changes.

2. You submitted this pull request to the master branch (default) rather than the gh-pages branch. For a tutorial style repo, whose main purpose is to serve as a website, i only commit to the gh-pages branch. It looks a little alarming when there's a pull request for 9,839 new lines of code and a few dozen files ;). From the command line you would git push origin gh-pages if you wanted to push to your version of gh-pages. I think you could also fix it when you you file the pull request by selecting your master branch but my gh-pages branch to merge.