Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats

Authors: Edna Chiang, Marian L. Schmidt, Michelle Berry, Bopaiah A. Biddanda, Ashley Burtner, Thomas H. Johengen, Danna Palladino, Vincent J. Denef

Accepted by PLoS ONE on Mar 17th, 2018

Link to article: http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0195112

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Information about this repository:

Directories:

1. analysis: Contains all files used in analysis, including:
   • initial_processing: Contains functions and files used to import mothur data into R
   • metadata: Contains metadata files used in multiple linear regression modelling and bioenv analysis
   • tree_files: Contains files used to create IToL tree
   • verruco-analysis.Rmd: Code for all data analyses
   • VerrucoData.RData: RData object created by initial_processing/verruco-import.R.
2. figures: Manuscript figures created by analysis/verruco-analysis.Rmd
3. make_tree: Files used to create IToL tree (an organized version of analysis/tree_files)
4. mothur_output: Output files from mothur pipeline
5. raw_reads: Original fastq files
6. tables: Excel files of manuscript tables

Note: This project is under the GNU general public license.