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Computational resources for getting started in the DuDe Labs

Duhaime Lab GitHub
Denef Lab GitHub

01: The Unix Shell

• Software Carpentry tutorials

02: Working on Flux

• What is FLUX?
• Getting flux help
• Introductory lessons for using FLUX for microbiome analysis

03: Mothur tutorials

• Miseq SOP (Schloss Lab)
• DuDe Lab SOPs

04: Analysis in R

• Software carpentry lessons
• Swirl lessons (in RStudio)

Metagenomics

...to come

• SOP
• EMIRGE
• Anvio ...

Github

...to come

Reporting results

...to come

• creating GitHub wikis
• R pubs
• shiny apps