The Deconomix project aims to provide a comprehensive Python package for the task of cell type deconvolution of bulk transcriptomics data.
Deconvolution of omics data in Python with Deconomix – cellular compositions, cell-type specific gene regulation, and background contributions
M. Mensching-Buhr1, T. Sterr1, N. Seifert, D. Völkl, J. Tauschke, A. Rayford, H. Zacharias, S. Grellscheid,T. Beißbarth, F. Görtler, M. Altenbuchinger
1 These authors contributed equally.
https://doi.org/10.1101/2024.11.28.625894
bioRxiv (Preprint)
December 2024
F. Görtler, M. Mensching-Buhr,Ø. Skaar, S. Schrod, T. Sterr, A. Schäfer, T. Beißbarth, A. Joshi, H. Zacharias, S. Grellscheid, M. Altenbuchinger
https://doi.org/10.1093/bioinformatics/btaf179
Bioinformatics (ISMB 2024 Proceedings)
June 2024
D. Völkl, M. Mensching-Buhr, T. Sterr, S. Bolz, A. Schäfer, N. Seifert, J. Tauschke, A. Rayford, O. Straume, H. Zacharias, S. Grellscheid, T. Beißbarth, M. Altenbuchinger, F. Görtler
https://doi.org/10.1093/bioinformatics/btaf179
Bioinformatics (ISMB/ECCB 2025 Proceedings)
January 2025
N. Seifert, L. Engel, J. Tauschke, T. Sterr, J. Demmer, M. Mensching-Buhr, D. Völkl, S. Grellscheid, T. Beißbarth, F. Görtler, H. Zacharias, M. Altenbuchinger
https://doi.org/10.1101/2025.05.08.652868
bioRxiv (Preprint)
May 2025