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Pull requests: DaymudeLab/assembly-theory

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Pull requests list

Extract minimum assembly pathways as directed acyclic graphs of fragments feature An entirely new capability
#153 opened Jun 24, 2026 by jdaymude Contributor • Draft
6 tasks
1
@jdaymude
Implement searching for alternative pathways
#147 opened May 14, 2026 by champagnealexandre Loading…
Implement algorithm from Seet et al. for pathway reconstruction
#146 opened May 14, 2026 by champagnealexandre Loading…
perf: speed up assembly search via match ordering optimization An optimization to existing implementation
#141 opened Mar 18, 2026 by rlaplaza Loading…
1
Implement a reduction to the maximum weighted clique problem algorithm A new or improved algorithm
#105 opened Jul 29, 2025 by Garrett-Pz Collaborator • Draft
1
Adding structured datasets for detailed performance characterization data Additions or modifications to reference datasets
#104 opened Jul 25, 2025 by colemathis Collaborator Loading…
Add Faulon et al. labeled graph canonization algorithm A new or improved algorithm
#84 opened Jul 11, 2025 by devrz45 Collaborator Loading…
1
Canonization algorithm A new or improved algorithm duplicate This issue or pull request already exists
#15 opened Feb 3, 2025 by devrz45 Collaborator Loading…
6
ProTip! Follow long discussions with comments:>50.