Dockerized OpenVRE

Deployment of a full openVRE-based analysis platform, including:

• openVRE module (frontend and backend): https://github.com/inab/openVRE/tree/dockerized
• Keycloak Authentication server
• Cluster SGE

Architecture

Installation (provisional)

Require Docker/Docker-compose

1. clone https://gitlab.bsc.es/FL/dashboard-demo.git (check branch for master o eucaim_fld)
2. cd to dashboard-demo/front_end
3. git submodule add https://gitlab.bsc.es/FL/openvre-demo (select appropriate branch)
4. Configure .env: HOSTNAME and IP_HOST y comprovar …./config/globals.inc.php
5. docker-compose build
6. docker-compose up -d
7. mongo_seed loads mongodb contents (drop existing data, remove --drop from mongo_seed import.sh after first load)
8. rsync front_end/openVRE/install/data/ to volumes/shared_data
9. at docker sgecore, execute "qconf -mconf" to modify min_uid=1000 (and min_gid) to 0

Mockup Data adapted to DT4H