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Wisecondorx plots like Ichorcna

enhancementNew feature or requestNew feature or request

Status: Open.

#60 In DIncalciLab/samurai;

· llanc-h opened on Dec 15, 2025

FASTQC command number expected for "--memory"

Status: Open.

#58 In DIncalciLab/samurai;

· ahwanpandey opened on Dec 9, 2025

Paired Tumor/Normal workflow for ASCAT sc; sample concordance analyses for sWGS

enhancementNew feature or requestNew feature or request

Status: Open.

#56 In DIncalciLab/samurai;

· ahwanpandey opened on Nov 4, 2025

Multilane sequencing not handled correctly

enhancementNew feature or requestNew feature or request

Status: Open.

#48 In DIncalciLab/samurai;

· riederd opened on Sep 18, 2025

GISTIC2: Could not access the MCR component cache.

bugSomething isn't workingSomething isn't working

Status: Open.

#47 In DIncalciLab/samurai;

· imdanique opened on Aug 25, 2025

liquid biopsy doesn't start

bugSomething isn't workingSomething isn't working

Status: Open.

#46 In DIncalciLab/samurai;

· imdanique opened on Aug 23, 2025

Use of solid biopsy copy number caller

enhancementNew feature or requestNew feature or request

Status: Open.

#45 In DIncalciLab/samurai;

· TBradley27 opened on Jun 29, 2025

Integration of CINmetrics R package in SAMURAI

enhancementNew feature or requestNew feature or request

Status: Open.

#41 In DIncalciLab/samurai;

· SaraPotente opened on Apr 30, 2025

Integration of HRDCNA module in liquid_biopsy subworkflow

enhancementNew feature or requestNew feature or request

Status: Open.

#40 In DIncalciLab/samurai;

· SaraPotente opened on Apr 29, 2025

Increase png resolution and provide PDF output in ASCAT.sc plots

enhancementNew feature or requestNew feature or request

upstream

Status: Open.

#39 In DIncalciLab/samurai;

· LMannarino opened on Mar 27, 2025

Update ascat_sc module

enhancementNew feature or requestNew feature or request

Status: Open.

#37 In DIncalciLab/samurai;

· SaraPotente opened on Feb 28, 2025

Switch to upstream nf-core modules where possible

Status: Open.

#34 In DIncalciLab/samurai;

· lbeltrame opened on Feb 5, 2025