Feat/serve auto freshen#8
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Detect files added/changed/removed since the last extraction and run an incremental rebuild before answering a query, so files an agent writes mid-session are queryable without a separate watch/update. - synaptic-incremental: new `freshen` module (build-provenance manifest + on-disk change detection via the mtime fastpath); `rebuild_with_detect` reuses one scan so the serve catch-up walks the tree once. - serve: debounced on-query staleness gate (`needs_freshen`) + synchronous incremental catch-up (`apply_freshen`) under the rebuild lock, on both the stdio and HTTP transports. Opt-out via SYNAPTIC_SERVE_AUTOFRESH; tunable debounce (SYNAPTIC_SERVE_AUTOFRESH_DEBOUNCE_MS) and cap (SYNAPTIC_SERVE_AUTOFRESH_MAX_FILES). - rebuild: allow a bounded shrink on incremental rebuilds so symbol removals (e.g. deleting a method) propagate; the strict shrink guard is kept for full rebuilds. - extract/update persist the provenance manifest (reusing their existing scan).
Wrap long assert!/call_tool lines per rustfmt so `cargo fmt --all --check` (the lint CI job) passes. No behavior change.
Surface cross-repo federation as a top-of-README selling point: the same workflow scales from a single small folder to a large monorepo or a fleet of separate repositories federated into one graph with real cross-repo edges.
Fixes the docs CI job: rustdoc parsed `<hex>`/`<filename>` as HTML tags under RUSTDOCFLAGS=-D warnings.
…shen # Conflicts: # Cargo.lock
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