Develop#187
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…environment isolation and workspace cleanup (#133) Co-authored-by: Gowtham Rao MD PhD <gowtham.rao@coreason.ai>
…rrors (#135) * feat: formalize Coreason Shared Kernel Ontology with new AST and Active Inference schema definitions * feat: refactor workflow nodes to a clinical Fahrenheit conversion pipeline and update provenance metadata * feat: normalize structural CIDs and enforce strict topology class requirements for neurosymbolic nodes, adding verification test script * feat: implement dynamic XYZ clinical binary parser and add intent-based fabrication tests * feat: add URN-based tool scaffolding and discovery-driven hallucination correction for DAG topologies * refactor: harden DAG compiler and router by sanitizing hallucinated fields and enforcing Pydantic constraints. * feat: enhance agent prompt with recursive tool-call prevention, improve manifest parsing, and add URN-based tool promotion utilities. * Fixed the agent building * Removed unwanted files * Re added file which delete accidentally --------- Co-authored-by: dk-uppi-aks <akshayavc15@gmail.com>
…ix wheel incompatibilities
…freethreaded ABI conflicts
…ethreaded fallback
…y allowing multiprocessing passthrough
…memory watchdog, and custom sandbox restrictions
- Run ruff format to fix formatting in compiler.py - Ignore unused args user_prompt and kwargs in tests/api/test_predict_router_boundaries.py to fix ARG002 - Fix DiscoveryIndexer mock in test_discovery_indexer.py missing profiles attribute - Update test_constrained_decoding_compiler.py to expect did:agent: prefix in graph node edges
…Error in coverage
#137) * feat: implement zero-trust CID verification for capability bundles and add custom runtime exceptions * feat: implement semantic tool discovery indexer, DAG orchestration workflow, and predictive routing API framework * chore: mock network and suppress CI warnings for robust testing * fix: resolve ruff linting errors for respx import * style: fix formatting in fabricator.py to pass pre-commit checks * test: achieve 100% diff hit coverage for 20260504-distributed-cid integration * fix: resolve ruff lint errors in test_fabricator.py * fix: remove unnecessary encode argument in test_capability_allocator.py * fix: resolve mypy errors in execution_plane tests * style: format python files using ruff format * fix: replace unused noqa ARG002 with underscore prefixed arguments in test_fabricator.py * feat: implement Temporal worker orchestration, VRAM watchdog, and intent-based fallback actuator * fix: ruff ARG002 unused arguments in test_fabricator * fix: resolve temporal sandbox RecursionError and CI FileNotFoundError
Used the db file path instead of hard coding.
fix(tensor-routing): resolve SGLang variadic logprobs schema crash and harden compiler constraints This merge addresses Issue #128 by introducing robust parsing for the Tier-0 SGLang inference engine, ensuring that malformed or variadic logprob structures do not crash the orchestrator. Additionally, it significantly fortifies the `UniversalCompiler` against topological hallucinations. Key Fixes & Implementations: - **Resilient SGLang Logprob Parsing (`sglang_kinetic_client.py`)**: Implemented a deep nested parser to handle the multiple schema variations returned by SGLang (`input_token_logprobs`, lists of lists, dicts). Safely applies `math.exp()` to derive true probabilities and falls back gracefully to `COREASON_SAMPLING_PROBABILITY` on extraction errors, preventing Kinetic Execution Plane crashes. - **Compiler Hallucination Traps (`compiler.py`)**: Hardened the zero-trust generation prompt with 7 new critical rules. Enforces Anti-CRUD causal naming, prevents LLM Pydantic syntax regurgitation, and dictates semantic edge mapping for the topological matrix. - **Genesis Provenance Guardrails (`compiler.py`)**: Enforces exact regex validation (e.g., `did:coreason:system`) on `extracted_by` and strictly bounds `pq_algorithm` to `ml-dsa` at the prompt layer, acting as a preemptive strike against URN spoofing. - **Isomorphism & Typing Fixes (`compiler.py`)**: Fixed `TypeError` crashes when extracting Python `Enum` hint types. Also established fallback compatibility (`__fields__` vs `model_fields`) for parsing schemas across Pydantic V1/V2 environments.
…on and add support for MCP tool communication. (#136) feat: Refactor Kinetic Tool Fabrication and Enforce File I/O Guillotine This merge completes the structural overhaul of the automatic tool fabrication pipeline in `coreason-runtime`. It resolves critical Lexical Architecture violations by strictly enforcing the "File I/O Guillotine" and transitions the runtime to a compliant, intent-based fabrication flow via the native MCP `agentic_forge`. Key Architectural Alignments & Features: * **File I/O Guillotine Compliance:** Refactored `fabricator.py` to completely eliminate local filesystem mutation (`open()`, `os.write()`) by swarm identities. Python code generation is now mechanically bound and executed exclusively via the `coreason-meta-engineering` MCP server. * **Intent-Based Fabrication Flow:** Implemented native invocation pipelines for universal Fab Lines (`scaffold_manifest_state`, `scaffold_logic_actuator`, `scaffold_epistemic_node`), allowing epistemic nodes to delegate the physical instantiation of geometric schemas and logic capabilities downstream. * **Tensor Routing & Orchestration:** Expanded and stabilized `predict_router.py`, workflow activities, and telemetry components to seamlessly support autonomous agent response types and dynamic MCP server configuration. Renamed local execution activities (e.g., `ExecuteLocalOutlinesInferenceComputeActivity`) to adhere to kinetic naming protocols. * **Test Suite Overhaul (Zero-Trust Mandate):** * Amputated all instances of `unittest.mock` across the test suite, injecting physical `httpx.ASGITransport` intercepts and ephemeral temporal execution networks to guarantee strict architectural isomorphism. * Validated and achieved 100% test coverage with the addition of `test_fabricator.py`, `test_verify_bundle_integrity.py`, and `test_universal_dynamic_tool_routing.py`. * Resolved Pydantic validation failures in dynamic tool routing mock handoffs by ensuring `DAGTopologyManifest` schemas include mandatory `attestation_receipt` blocks. * **CI/CD Stabilization:** Extended timeout limits for all CI jobs to 30 minutes to support rigorous physical resilience/temporal simulations, and addressed all outstanding Ruff, MyPy, and pre-commit formatting regressions.
… and SLSA provenance
…flexibility, and expand test coverage for security and execution gaps
…date edge-case failures.
…streamline error handling in Oracle orchestration
…DK (#184) (#185) - Add opentelemetry-api, opentelemetry-sdk, opentelemetry-exporter-otlp to deps - Create src/coreason_runtime/utils/tracing.py with TracerProvider, OTLP export, and no-op fallbacks - Refactor EmitSpanIOActivity to emit native OTel spans instead of validating ExecutionSpanReceipt Pydantic JSON - Replace otel_telemetry_sink placeholder stub in logger.py with real OTel span emission - Enable instructor auto-instrumentation via TracerProvider init in predict_router - Add comprehensive test suite for tracing module (tests/utils/test_tracing.py) - Update test_emit_span_valid and test_otel_telemetry_sink_forwards_message Closes #184
Removed deprecated federation ingress, aligned OntologicalReificationReceipt payload, and removed deprecated fields from WorkflowManifest in KineticExecutionManifold.
…TL validation tests
* refactor(runtime): migrate to TransformerLens hook points * chore(deps): point coreason-manifest to feat/transformer-lens-migration * revert: chore(deps): point coreason-manifest to feat/transformer-lens-migration * fix(orchestration): use getattr for backwards compatibility with target_hook_points * test: add unit test to verify getattr behavior with custom class attributes * feat: implement NemoClaw master MCP bridge and add automated security audit workflow, removing obsolete test script.
…nt ChaosExecutionWorkflow mapping to new URN
…regression for NeuralAuditAttestationReceipt
![github-advanced-security[bot]](https://avatars.githubusercontent.com/in/57789?s=60&v=4){kind=small}
| run: git clean -xfd -e .uv_cache | ||
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| - name: Enforce Type Isomorphism (mypy) | ||
| run: uv run mypy src/ tests/ | ||
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| run: git clean -xfd -e .uv_cache | ||
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| uses: astral-sh/setup-uv@v7 |
| if [ -f "compose.yaml" ]; then docker compose down -v || true; fi | ||
| sudo chown -R $(whoami):$(whoami) ${{ github.workspace }} | ||
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| uses: astral-sh/setup-uv@v7 |
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| - name: Install uv | ||
| uses: astral-sh/setup-uv@v7 |
| run: ls -la | ||
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| if: hashFiles('Dockerfile') != '' |
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| - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 | ||
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| - name: Install uv | ||
| uses: astral-sh/setup-uv@v7 |
Codecov Report❌ Patch coverage is 📢 Thoughts on this report? Let us know! |
…lerts and constrain uv.lock to linux x86_64
…d updating deptry ignores
Closed
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