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ci(deps): bump github/codeql-action from 3 to 4#4
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@dependabot dependabot Bot commented on behalf of github May 7, 2026

Bumps github/codeql-action from 3 to 4.

Release notes

Sourced from github/codeql-action's releases.

v3.35.3

  • Upcoming breaking change: Add a deprecation warning for customers using CodeQL version 2.19.3 and earlier. These versions of CodeQL were discontinued on 9 April 2026 alongside GitHub Enterprise Server 3.15, and will be unsupported by the next minor release of the CodeQL Action. #3837
  • Configurations for private registries that use Cloudsmith or GCP OIDC are now accepted. #3850
  • Best-effort connection tests for private registries now use GET requests instead of HEAD for better compatibility with various registry implementations. For NuGet feeds, the test is now always performed against the service index. #3853
  • Fixed a bug where two diagnostics produced within the same millisecond could overwrite each other on disk, causing one of them to be lost. #3852
  • Update default CodeQL bundle version to 2.25.3. #3865

v3.35.2

  • The undocumented TRAP cache cleanup feature that could be enabled using the CODEQL_ACTION_CLEANUP_TRAP_CACHES environment variable is deprecated and will be removed in May 2026. If you are affected by this, we recommend disabling TRAP caching by passing the trap-caching: false input to the init Action. #3795
  • The Git version 2.36.0 requirement for improved incremental analysis now only applies to repositories that contain submodules. #3789
  • Python analysis on GHES no longer extracts the standard library, relying instead on models of the standard library. This should result in significantly faster extraction and analysis times, while the effect on alerts should be minimal. #3794
  • Fixed a bug in the validation of OIDC configurations for private registries that was added in CodeQL Action 4.33.0 / 3.33.0. #3807
  • Update default CodeQL bundle version to 2.25.2. #3823

v3.35.1

v3.35.0

v3.34.1

  • Downgrade default CodeQL bundle version to 2.24.3 due to issues with a small percentage of Actions and JavaScript analyses. #3762

v3.34.0

  • Added an experimental change which disables TRAP caching when improved incremental analysis is enabled, since improved incremental analysis supersedes TRAP caching. This will improve performance and reduce Actions cache usage. We expect to roll this change out to everyone in March. #3569
  • We are rolling out improved incremental analysis to C/C++ analyses that use build mode none. We expect this rollout to be complete by the end of April 2026. #3584
  • Update default CodeQL bundle version to 2.25.0. #3585

v3.33.0

  • Upcoming change: Starting April 2026, the CodeQL Action will skip collecting file coverage information on pull requests to improve analysis performance. File coverage information will still be computed on non-PR analyses. Pull request analyses will log a warning about this upcoming change. #3562 To opt out of this change:
    • Repositories owned by an organization: Create a custom repository property with the name github-codeql-file-coverage-on-prs and the type "True/false", then set this property to true in the repository's settings. For more information, see Managing custom properties for repositories in your organization. Alternatively, if you are using an advanced setup workflow, you can set the CODEQL_ACTION_FILE_COVERAGE_ON_PRS environment variable to true in your workflow.
    • User-owned repositories using default setup: Switch to an advanced setup workflow and set the CODEQL_ACTION_FILE_COVERAGE_ON_PRS environment variable to true in your workflow.
    • User-owned repositories using advanced setup: Set the CODEQL_ACTION_FILE_COVERAGE_ON_PRS environment variable to true in your workflow.
  • Fixed a bug which caused the CodeQL Action to fail loading repository properties if a "Multi select" repository property was configured for the repository. #3557
  • The CodeQL Action now loads custom repository properties on GitHub Enterprise Server, enabling the customization of features such as github-codeql-disable-overlay that was previously only available on GitHub.com. #3559
  • Once private package registries can be configured with OIDC-based authentication for organizations, the CodeQL Action will now be able to accept such configurations. #3563
  • Fixed the retry mechanism for database uploads. Previously this would fail with the error "Response body object should not be disturbed or locked". #3564
  • A warning is now emitted if the CodeQL Action detects a repository property whose name suggests that it relates to the CodeQL Action, but which is not one of the properties recognised by the current version of the CodeQL Action. #3570

v3.32.6

  • Update default CodeQL bundle version to 2.24.3. #3548

v3.32.5

  • Repositories owned by an organization can now set up the github-codeql-disable-overlay custom repository property to disable improved incremental analysis for CodeQL. First, create a custom repository property with the name github-codeql-disable-overlay and the type "True/false" in the organization's settings. Then in the repository's settings, set this property to true to disable improved incremental analysis. For more information, see Managing custom properties for repositories in your organization. This feature is not yet available on GitHub Enterprise Server. #3507
  • Added an experimental change so that when improved incremental analysis fails on a runner — potentially due to insufficient disk space — the failure is recorded in the Actions cache so that subsequent runs will automatically skip improved incremental analysis until something changes (e.g. a larger runner is provisioned or a new CodeQL version is released). We expect to roll this change out to everyone in March. #3487
  • The minimum memory check for improved incremental analysis is now skipped for CodeQL 2.24.3 and later, which has reduced peak RAM usage. #3515
  • Reduced log levels for best-effort private package registry connection check failures to reduce noise from workflow annotations. #3516
  • Added an experimental change which lowers the minimum disk space requirement for improved incremental analysis, enabling it to run on standard GitHub Actions runners. We expect to roll this change out to everyone in March. #3498

... (truncated)

Changelog

Sourced from github/codeql-action's changelog.

4.32.3 - 13 Feb 2026

  • Added experimental support for testing connections to private package registries. This feature is not currently enabled for any analysis. In the future, it may be enabled by default for Default Setup. #3466

4.32.2 - 05 Feb 2026

  • Update default CodeQL bundle version to 2.24.1. #3460

4.32.1 - 02 Feb 2026

  • A warning is now shown in Default Setup workflow logs if a private package registry is configured using a GitHub Personal Access Token (PAT), but no username is configured. #3422
  • Fixed a bug which caused the CodeQL Action to fail when repository properties cannot successfully be retrieved. #3421

4.32.0 - 26 Jan 2026

  • Update default CodeQL bundle version to 2.24.0. #3425

4.31.11 - 23 Jan 2026

  • When running a Default Setup workflow with Actions debugging enabled, the CodeQL Action will now use more unique names when uploading logs from the Dependabot authentication proxy as workflow artifacts. This ensures that the artifact names do not clash between multiple jobs in a build matrix. #3409
  • Improved error handling throughout the CodeQL Action. #3415
  • Added experimental support for automatically excluding generated files from the analysis. This feature is not currently enabled for any analysis. In the future, it may be enabled by default for some GitHub-managed analyses. #3318
  • The changelog extracts that are included with releases of the CodeQL Action are now shorter to avoid duplicated information from appearing in Dependabot PRs. #3403

4.31.10 - 12 Jan 2026

  • Update default CodeQL bundle version to 2.23.9. #3393

4.31.9 - 16 Dec 2025

No user facing changes.

4.31.8 - 11 Dec 2025

  • Update default CodeQL bundle version to 2.23.8. #3354

4.31.7 - 05 Dec 2025

  • Update default CodeQL bundle version to 2.23.7. #3343

4.31.6 - 01 Dec 2025

No user facing changes.

4.31.5 - 24 Nov 2025

  • Update default CodeQL bundle version to 2.23.6. #3321

4.31.4 - 18 Nov 2025

... (truncated)

Commits
  • 5145c11 Bump ruby/setup-ruby
  • 7108503 Bump @​ava/typescript from 6.0.0 to 7.0.0
  • 4fe9b1e Merge pull request #3856 from github/henrymercer/overlay-add-log-group
  • 56733fb Add log group for downloading overlay-base DB
  • 0a63608 Add GHES 3.21 to supported versions table
  • 97be3af Deprecate CodeQL versions 2.19.3 and earlier
  • See full diff in compare view

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lluvr and others added 20 commits May 5, 2026 10:06
…ontracts, three-layer validation framework, quality criteria, failure modes
…r manual, configurable triggers, failure-isolated, bounded latency (72 tests pass)
…y, completes action-time injection coverage (87 tests pass)
…dd CMA_FM_CLASSIFIER plugin hook, document loose-coupling pattern (98 tests pass)
Whetstone is committed to commercial; it does not belong with the
open Clarethium reference artifacts in the 'Clarethium body' section.
'Three reference artifacts' becomes 'two open reference artifacts';
Whetstone bullet removed; Touchstone and Lodestone remain. cma's
role as Lodestone companion is unchanged.

Signed-off-by: Lovro Lucic <11740211+lluvr@users.noreply.github.com>
- ARCHITECTURE.md sections were 8, 10, 11; renumber to 8, 9, 10 contiguous
- Update cross-references in README.md, CHANGELOG.md, cma script
- Add corruption warning to recurrence and behavior query paths so all four
  Python heredocs print "cma: skipped N corrupted line(s)..." consistently
- README test count: 77 to 98 cases (current actual)
Two stale claims in the Roadmap section. The shell wrapper integration
was described as "in development" but ships in hooks/cma-pre and the
README earlier sections document its zsh and bash usage in detail. The
"Beyond 1.0" list also incorrectly included the shell wrapper.

Roadmap now reflects shipped state: action-time injection ships for
Claude Code (PreToolUse and SessionStart hooks) and for shell environments
(zsh native preexec, bash via bash-preexec). The Beyond 1.0 list is
trimmed to genuinely-pending items: counterfactual capture analysis,
per-project data scoping, recency-weighted surface ranking.
Adds the Model Context Protocol distribution layer for cma's
compound practice loop. cma-mcp lives under cma-mcp/ as a sibling
component to the bash CLI; both ship from this repository under
one Apache-2.0 license, one governance model, one issue tracker,
with independent release cadence (cma-1.x and cma-mcp-0.x).

Component (cma-mcp/):
  - mcp_server.py + mcp_protocol.py: MCP over stdio, manual
    JSON-RPC 2.0 (no SDK dependency, DECISIONS AD-001)
  - mcp_schema.py + mcp_resources.py + mcp_compose.py: 7 tools
    mirroring bash cma's primitives, 4 resources, three-section
    payload (analysis + agent_guidance + provenance)
  - cma_subprocess.py + cma_jsonl.py: subprocess wrapper around
    bash cma (DECISIONS AD-004 argv-array, AD-003 5s timeout) and
    JSONL reader matching cma's DATA.md schema (AD-002)
  - mcp_log.py: stderr-only logging
  - tests/: 34 cases covering protocol conformance, three-section
    payload determinism, JSONL parsing tolerance, and subprocess
    isolation including an argv-injection-resistance probe
  - docs/: MCP_SERVER reference, ANTICIPATED_CRITIQUES (10
    enumerated adversarial readings), VALIDATION_PROGRAM (three
    pre-registered validation layers)
  - pyproject.toml: zero runtime deps; PyPI package 'cma-mcp'
  - README.md: PyPI-facing quickstart
  - CHANGELOG.md: independent release history

Project-level (repository root):
  - STRATEGY.md: durable decisions DD-1..DD-7 (subprocess wrapper,
    no SDK dep, bash+WSL stance, methodology-agnostic substrate,
    three-section payload, schema parity, Apache-2.0+CC-BY-4.0)
  - DECISIONS.md: architectural log AD-001..AD-007 for the MCP
    component
  - GOVERNANCE.md: BDFL governance, named curator, covers entire
    repo
  - CONTRIBUTING.md: DCO sign-off, file layout for both bash and
    Python paths
  - SECURITY.md: threat model covering both components
  - CITATION.cff: cite cma 1.0 (primary citable artifact)
  - NOTICE: per-component licensing summary
  - .gitignore: covers Python build artifacts

CI (.github/workflows/):
  - tests-mcp.yml: pytest matrix on Python 3.10/3.11/3.12, scoped
    to cma-mcp/** changes
  - dco-check.yml: Signed-off-by enforcement (entire repo)
  - codeql.yml: security-and-quality scan (Python in cma-mcp/)
  - PULL_REQUEST_TEMPLATE.md and ISSUE_TEMPLATE/ for both
    components

cma's existing surface (cma binary, hooks, test.sh, bench.sh,
DESIGN.md, ARCHITECTURE.md, DATA.md, CHANGELOG.md, README.md)
unchanged in scope; README.md gains a cma-mcp pointer section.

Signed-off-by: Lovro Lucic <11740211+lluvr@users.noreply.github.com>
… CI coverage

Six gap-fixes from a fresh-eyes pass on the consolidated repo:

1. Fix stale Clarethium/cma-mcp URLs in two places:
   - CONTRIBUTING.md issue link → Clarethium/cma/issues with [cma]/
     [cma-mcp] prefix guidance
   - mcp_compose.py citation string → monorepo subdirectory URL
     (the citation appears in every payload's provenance block)

2. cma_version() is now robust to forks/versions that lack the
   --version flag. Tries --version first (canonical cma's
   documented surface); falls back to scanning 'cma help' output
   for a 'Version X.Y.Z' line. Empirical verification: the
   operator's locally-diverged cma 1.1.0 (subcommand-only) now
   surfaces correctly in the install fingerprint as 'cma 1.1.0'
   instead of null.

3. Apache-2.0 §4(d) wheel compliance: bundle LICENSE and NOTICE
   in cma-mcp/. Declared via pyproject.toml [tool.setuptools]
   license-files so setuptools writes them to the wheel's
   dist-info/licenses/ directory. Verified: built wheel carries
   both files.

4. Convert cma-mcp/README.md cross-component links from relative
   ../*.md to absolute github.com URLs. Relative parent paths
   render as broken links on PyPI; absolute URLs work both on
   PyPI and on GitHub.

5. tests-mcp.yml now installs the in-repo cma binary to PATH
   before running pytest. Without this, the argv-injection-
   resistance probe and every other subprocess-bound test
   silently skipped via the cma_binary_available fixture --- a
   coverage gap masquerading as green CI. Adds a smoke step
   ('cma --version') to fail-fast if the binary is broken.

6. CONTRIBUTING.md no longer references a nonexistent
   tests/test_mcp_adversarial.py file. The actual coverage
   layout (test_mcp_server / test_resources / test_subprocess /
   test_payload_determinism) is named accurately so contributors
   know where adversarial cases land.

Signed-off-by: Lovro Lucic <11740211+lluvr@users.noreply.github.com>
The prior commit consolidated cma-mcp into Clarethium/cma as a
subdirectory after explicit reasoning with the operator. The
decision deserves to land in the durable record:

- DECISIONS.md AD-008 records the monorepo choice, the wrapper-of
  vs substrate-uses distinction that drives it, the trade-offs
  accepted, and the reversibility path via git filter-repo.

- cma-mcp/docs/ANTICIPATED_CRITIQUES.md C-11 enumerates the
  adversarial reading ('monorepos rot') and answers it with the
  structural argument plus a concrete worked example of drift
  the consolidation prevents (revisit_after_date hypothetical).

Pinned by the project's construct-honesty discipline: a decision
this load-bearing should be visible to a reader who has never
been part of the conversation that produced it.

Signed-off-by: Lovro Lucic <11740211+lluvr@users.noreply.github.com>
test.sh:266 SC1003: replace 'with \backslashes\' with concatenation
'with \backslashes'\\ — same argv ('with \backslashes\') without the
\' inside-single-quotes pattern shellcheck (rightly) warns about.

bench.sh:63 SC2207: replace IFS-and-array-splat with mapfile -t to
read sorted lines without word-splitting. Drops the now-unneeded
unset IFS.

hooks/cma-pre:89 SC2221/SC2222: drop the redundant *oauth* alternative
from the auth surface case — *auth* already matches it (oauth contains
auth), making the explicit pattern dead code. Behavior preserved.

All 98 bash tests pass; shellcheck runs clean across cma, test.sh,
bench.sh, and the three hooks under set -e.

Signed-off-by: Lovro Lucic <11740211+lluvr@users.noreply.github.com>
Closes the install-fingerprint trust gap on the PyPI install path
and adds the missing release plumbing.

git_sha bake (closes the PyPI fingerprint degradation):
  cma-mcp's install fingerprint advertises forensic traceability
  ('lets an operator confirm the cma-mcp install configured in
  their MCP client is the expected one'), but the existing runtime
  probe only worked in development clones — after pip install from
  a wheel, .git was gone and git_sha silently dropped to null.

  setup.py now writes _build_info.py with the SHA at build time.
  Resolution order: CMA_MCP_BUILD_SHA env var (CI sets it to
  GITHUB_SHA so PEP 517 build isolation does not strip the
  context), git rev-parse on the source tree (editable install),
  empty string. The runtime _git_sha() in mcp_server.py prefers
  the live probe and falls back to BUILD_GIT_SHA. Two new tests
  pin both code paths.

Publish workflow (.github/workflows/publish-mcp.yml):
  Mirrors frame-check-mcp's pattern with cma-mcp adaptations:
  cma-mcp-X.Y.Z tag trigger, version-sync gate (tag = pyproject =
  SERVER_VERSION), build with env-var SHA injection, twine
  validation, wheel-content audit (modules + license-files), clean
  venv smoke install verifying the baked SHA. PyPI / TestPyPI
  upload jobs are present but commented out — the lift checklist
  in the workflow header gates publication on Zenodo DOI
  allocation and a final pre-flight pass.

CI smoke step in tests-mcp.yml:
  Build the wheel + sdist on every push (with CMA_MCP_BUILD_SHA),
  install into a clean venv, exercise --help and --version, and
  fail loudly if the baked SHA is missing or the entry point is
  broken. Catches packaging regressions the editable-install
  pytest path cannot see.

CI badges:
  README and cma-mcp/README surface the live workflow status
  (tests, tests-mcp, codeql) so operators see project health at
  a glance instead of trusting prose claims.

CHANGELOG:
  cma-mcp/CHANGELOG.md documents the bake mechanism, the publish
  workflow, the CI smoke step, and updates the test count from
  ~30 to 36 cases.
Signed-off-by: Lovro Lucic <11740211+lluvr@users.noreply.github.com>
…oubleshooting, latency bench, validation framing

Second pass of the publication-readiness lift, covering the
remaining real gaps from the fresh-eyes audit.

Test coverage: tests/test_mcp_wire.py spawns cma-mcp as a real
subprocess and exchanges JSON-RPC over stdin/stdout pipes. 12
cases pin the initialize handshake, catalog discovery,
error-envelope discipline, framing robustness, and end-to-end
tool dispatch. Total pytest count: 48.

Documentation: docs/ARCHITECTURE.md is the missing module
map; docs/FAQ.md addresses conceptual questions and per-client
install configs; docs/TROUBLESHOOTING.md leads with a
four-command diagnostic loop.

Latency benchmark (bench.py): mirrors bash cma's bench.sh
shape; confirms empirically that the wrapper itself adds
essentially zero overhead over the bash CLI it wraps.

Validation framing (VALIDATION_PROGRAM.md): new 'Interim
evidence' section publishes the single-operator pilot data
honestly. N=1 operator, ~150 days continuous capture; names
what compounds verifiably and what does not.
Bumps [github/codeql-action](https://github.com/github/codeql-action) from 3 to 4.
- [Release notes](https://github.com/github/codeql-action/releases)
- [Changelog](https://github.com/github/codeql-action/blob/main/CHANGELOG.md)
- [Commits](github/codeql-action@v3...v4)

---
updated-dependencies:
- dependency-name: github/codeql-action
  dependency-version: '4'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
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dependabot Bot commented on behalf of github May 7, 2026

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@lluvr lluvr force-pushed the main branch 2 times, most recently from ac00f04 to 4b4ee97 Compare May 7, 2026 11:27
@lluvr lluvr force-pushed the dependabot/github_actions/github/codeql-action-4 branch from 2969ee6 to 0099a33 Compare May 7, 2026 11:27
@lluvr lluvr force-pushed the main branch 2 times, most recently from 1cbba64 to 535ead0 Compare May 8, 2026 07:55
@lluvr lluvr closed this May 8, 2026
@lluvr lluvr deleted the dependabot/github_actions/github/codeql-action-4 branch May 8, 2026 08:20
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dependabot Bot commented on behalf of github May 8, 2026

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.

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