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outstanding changes for working version Build and Push Container #34: Commit c39c60c pushed by ctastad
10s master
master
10s
submission fixes for upgrade to snakemake 8+ Build and Push Container #33: Commit d775d93 pushed by ctastad
3m 56s master
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3m 56s
changed thread count for cellpose Build and Push Container #32: Commit 974f934 pushed by ctastad
4m 43s master
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4m 43s
reduced core and mem count for cellpose rule Build and Push Container #31: Commit fee3352 pushed by ctastad
3m 39s master
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Remove cholab-prep directory (now maintained in dedicated prep-sopa r… Build and Push Container #30: Commit cf5e912 pushed by ctastad
4m 36s master
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set gpu resources for cellpose seg Build and Push Container #29: Commit 47851c8 pushed by ctastad
4m 38s master
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4m 38s
expanded cellpose wall time Build and Push Container #28: Commit 9281be0 pushed by ctastad
4m 27s master
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added force, delete_cache, and recover to baysor cli interface Build and Push Container #27: Commit ae28a04 pushed by ctastad
17m 7s master
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updated run time of master process Build and Push Container #26: Commit 5d39d00 pushed by ctastad
16m 41s master
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corrected errors around novae execution and tangram map training data… Build and Push Container #25: Commit c4102a9 pushed by ctastad
33m 5s master
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pulling novae into dedicated script for better maintainability Build and Push Container #24: Commit 87f08bc pushed by ctastad
14m 20s master
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bump Build and Push Container #23: Commit f784991 pushed by ctastad
25m 13s master
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updated install sopa process to use local Build and Push Container #22: Commit 20b76e5 pushed by ctastad
22m 32s master
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working tangram training data table save Build and Push Container #21: Commit e723ef7 pushed by ctastad
15m 44s master
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removed vestige of threshold arg from tangram function Build and Push Container #20: Commit 16827d7 pushed by ctastad
16m 59s master
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attempt 2 at saving tangram maps as flat files Build and Push Container #19: Commit cdea8f7 pushed by ctastad
16m 31s master
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16m 31s
added note re numpy version correction Build and Push Container #18: Commit 6133fe3 pushed by ctastad
26m 8s master
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attempting to retain ad_map.uns['train_genes_df'] for annotation perf… Build and Push Container #17: Commit d05dbc7 pushed by ctastad
17m 13s master
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updated docs Build and Push Container #16: Commit ee30e94 pushed by ctastad
14m 29s master
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converted to using h100 gpus Build and Push Container #15: Commit 9d820c8 pushed by ctastad
31m 4s master
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remove threshold setting as it isn't relevant for tangram projection … Build and Push Container #14: Commit bceec9e pushed by ctastad
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exposed threshold param to cli interface Build and Push Container #13: Commit e5e8e56 pushed by ctastad
17m 35s master
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implemented arg for probability threshold in tangram Build and Push Container #12: Commit 3664342 pushed by ctastad
15m 27s master
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working novae rule Build and Push Container #11: Commit 723f4ca pushed by ctastad
17m 54s master
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implementation o f novae rule Build and Push Container #10: Commit d140e27 pushed by ctastad
18m 26s master
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18m 26s