v0.2.0

Broad refresh. Categorical change tracking fell off between now and the last release, and this version is being used as a checkpoint to move forward with more comprehensive versioning.

v0.1.7-beta

• implemented cite-seq routine as wnn
• reorgd script nomenclature
• created flexible data input for preprocessed seurat objects

v0.1.6-beta

• implemented SCTransform v2 method
• converted to hdf5 clustered output with SeuratDisk package

v0.1.5-beta

• created routine to perform wnn on scATAC-multiome data
• implemented use of renv dependency control
• added method for use of cluster annotation input
• cleanup to general cluster routine

v0.1.4-beta

• developed subroutine to create multimodal objects
• changed placement of object assay subsetting to allow for raw object
• implemented max.percent.mt cutoff feature

v0.1.3-beta

• created method to allow for single sample
• included individual.RDS object in output
• added parallelization functionality using future package

v0.1.2-beta

• fixed syntax issue for logging in macos
• added dimensionality plotting
• removed unnecessary loop from integrate process
• achieved mvp in macos environment

v0.1.1-beta

• fixed Read10x high droplet filter issue seen in zebra fish
• broke pipeline into dedicated subroutines
• implemented process continuity across subroutines
• implemented flexible checkpoint controls

v0.1.0-beta

• created merged process from the methods of Shikha, Mamta, and Chris