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Add fastMNN integration to batch correction

SINCLAIR

Status: Open.

#220 In CCBR/SINCLAIR;

· wong-nw opened on Apr 1, 2026

Review: Update for LIGER batch correction

SINCLAIR

Status: Open.

#219 In CCBR/SINCLAIR;

· wong-nw opened on Apr 1, 2026

refactor: use output directive instead of publish dir mode

SINCLAIR

Status: Open.

#215 In CCBR/SINCLAIR;

· kelly-sovacool opened on Mar 27, 2026

·  

2026-05

docs: recommend deleting work dir after project completion

documentationImprovements or additions to documentationImprovements or additions to documentation

SINCLAIR

Status: Open.

#214 In CCBR/SINCLAIR;

· kelly-sovacool opened on Mar 27, 2026

link to R function documentation in Rmd reports

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

SINCLAIR

Status: Open.

#213 In CCBR/SINCLAIR;

· kelly-sovacool opened on Mar 27, 2026

·  

2026-03

Bug: "containerize" branch does not complete batch correction

bugSomething isn't workingSomething isn't working

high priority

SINCLAIR

Status: Open.

#211 In CCBR/SINCLAIR;

· wong-nw opened on Mar 16, 2026

·  

2026-04

Bug: Test run produces both output and results directory

SINCLAIR

Status: Open.

#207 In CCBR/SINCLAIR;

· wong-nw opened on Mar 9, 2026

refactor with improved modular design

SINCLAIR

Status: Open.

#202 In CCBR/SINCLAIR;

· kelly-sovacool opened on Nov 7, 2025

Upgrade to liger >= v2

low priority

SINCLAIR

Status: Open.

#201 In CCBR/SINCLAIR;

· kelly-sovacool opened on Oct 16, 2025

Use RDS files as input files for Filtering/Preprocess

SINCLAIR

Status: Open.

#200 In CCBR/SINCLAIR;

· wong-nw opened on Oct 10, 2025

celldex expects access to a lock file in the user's home dir

bugSomething isn't workingSomething isn't working

SINCLAIR

Status: Open.

#199 In CCBR/SINCLAIR;

· kelly-sovacool opened on Sep 22, 2025

small sample sizes failing at batch correction

low priority

SINCLAIR

Status: Open.

#194 In CCBR/SINCLAIR;

· kcgfarb opened on Sep 12, 2025