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"/dev/fd/63: line 1: 404::" command not found error at the end of the log file

CARLISLERepoNameRepoName

Status: Open.

#205 In CCBR/CARLISLE;

· kopardev opened on Dec 1, 2025

·  

2025-12

combine_homer errors out if no peaks are called

CARLISLERepoNameRepoName

Status: Open.

#204 In CCBR/CARLISLE;

· kopardev opened on Nov 26, 2025

·  

2025-12

findMotif fails if 0 peaks

CARLISLERepoNameRepoName

Status: Open.

#203 In CCBR/CARLISLE;

· kopardev opened on Nov 26, 2025

·  

2025-12

Not use summit BED for motif enrichment

CARLISLERepoNameRepoName

Status: Open.

#202 In CCBR/CARLISLE;

· kopardev opened on Nov 26, 2025

·  

2025-12

HOMER motif enrichment

CARLISLERepoNameRepoName

Status: Open.

#201 In CCBR/CARLISLE;

· kopardev opened on Nov 25, 2025

·  

2025-12

Pool controls

CARLISLERepoNameRepoName

Status: Open.

#200 In CCBR/CARLISLE;

· kopardev opened on Nov 25, 2025

·  

2025-12

Gather required files (FASTA/GTF/Blacklist BED) for Hap1/2 of RPE1

Status: Open.

#179 In CCBR/CARLISLE;

· kopardev opened on Aug 22, 2025

Add RPE1_Hap1 and RPE1_Hap2 as reference

ccbr1431

Status: Open.

#178 In CCBR/CARLISLE;

· kopardev opened on Aug 22, 2025

Provide custom adapters.fa file from trimming

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#174 In CCBR/CARLISLE;

· kopardev opened on Jun 4, 2025

Add support for K-MetStat Panel of spike-in controls for CUT&RUN and CUT&Tag from Epicypher

CARLISLERepoNameRepoName

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#173 In CCBR/CARLISLE;

· kopardev opened on Jun 4, 2025

rewrite CLI in python

Status: Open.

#141 In CCBR/CARLISLE;

· kelly-sovacool opened on Jul 26, 2024

Add functionality for SINGLE END samples

enhancementNew feature or requestNew feature or request

Status: Open.

#78 In CCBR/CARLISLE;

· slsevilla opened on Jun 8, 2023