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[BI-2806] Remove trials cache #516

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[BI-2806] Remove trials cache #516

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a04b36e
Add todos
jloux-brapi Apr 22, 2026
b8444e9
Merge branch 'develop' into feature/BI-2806
jloux-brapi Apr 23, 2026
df7affd
Remove unused method from BrAPITrialDAO
jloux-brapi Apr 23, 2026
d1ae3d9
Fix first get method
jloux-brapi Apr 24, 2026
c1b0174
Update getTrials(UUID) method to use brapi directly
jloux-brapi Apr 28, 2026
6b6a695
Udpate remaining getMethods, fix enough exRef things to pass unit tests
jloux-brapi May 4, 2026
bb30594
Remove code setting brapiId to exRef
jloux-brapi May 4, 2026
a36229b
Merge branch 'develop' into fix_exrefs
jloux-brapi May 4, 2026
35cde9c
Changes to support ExperimentControllerIntegrationTest
jloux-brapi May 5, 2026
af7ceda
Fix remaining test failures and alter some code to support dbIds
jloux-brapi May 5, 2026
6854606
Remove cache from last get method
jloux-brapi May 5, 2026
1f18377
Remove cache from trial update
jloux-brapi May 5, 2026
c2083d8
Remove cache from post method and remove entirely for trials
jloux-brapi May 5, 2026
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5 changes: 1 addition & 4 deletions src/main/java/org/breedinginsight/brapi/v2/BrAPIStudiesController.java
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Original file line number Diff line number Diff line change
Expand Up @@ -114,6 +114,7 @@ public HttpResponse<Response<DataResponse<List<BrAPIStudy>>>> getStudies(
return ResponseUtils.getBrapiQueryResponse(authorizedStudies, studyQueryMapper, queryParams, searchRequest);
}

// TODO: Instead of getting all studies for a program and filtering, doing the filtering on brapi side
List<BrAPIStudy> studies = studyService.getStudies(programId)
.stream()
.peek(this::setDbIds)
Expand Down Expand Up @@ -172,10 +173,6 @@ private void setDbIds(BrAPIStudy study) {
.orElseThrow(() -> new IllegalStateException("No BI external reference found"))
.getReferenceID());

study.trialDbId(Utilities.getExternalReference(study.getExternalReferences(), Utilities.generateReferenceSource(referenceSource, ExternalReferenceSource.TRIALS))
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@jloux-brapi jloux-brapi May 6, 2026

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This is kind of a get ahead of the curve change. It might be able to remain as is, but might be tough to find later on when we use trialDbIds directly for studies.

.orElseThrow(() -> new IllegalStateException("No BI external reference found"))
.getReferenceID());

//TODO update locationDbId
}
}
5 changes: 2 additions & 3 deletions src/main/java/org/breedinginsight/brapi/v2/BrAPITrialsController.java
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Expand Up @@ -26,6 +26,7 @@
import io.micronaut.security.rules.SecurityRule;
import lombok.extern.slf4j.Slf4j;
import org.brapi.client.v2.model.exceptions.ApiException;
import org.brapi.v2.model.BrAPIExternalReference;
import org.brapi.v2.model.core.BrAPITrial;
import org.brapi.v2.model.core.response.BrAPITrialSingleResponse;
import org.breedinginsight.api.auth.*;
Expand Down Expand Up @@ -158,10 +159,8 @@ public HttpResponse<?> trialsTrialDbIdPut(@PathVariable("programId") UUID progra
return HttpResponse.notFound();
}

// TODO: Remove for trialDbId once cache is removed for that entity
private void setDbIds(BrAPITrial trial) {
trial.trialDbId(Utilities.getExternalReference(trial.getExternalReferences(), Utilities.generateReferenceSource(referenceSource, ExternalReferenceSource.TRIALS))
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@jloux-brapi jloux-brapi May 6, 2026 •
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This was preventing the frontend effectively from being able to use brapiTrialDbIds in the router. Bit of a nasty bugger. Expecting more changes like this in the future for other entities.

.orElseThrow(() -> new IllegalStateException("No BI external reference found"))
.getReferenceID());
trial.programDbId(Utilities.getExternalReference(trial.getExternalReferences(), Utilities.generateReferenceSource(referenceSource, ExternalReferenceSource.PROGRAMS))
.orElseThrow(() -> new IllegalStateException("No BI external reference found"))
.getReferenceID());
Expand Down
7 changes: 2 additions & 5 deletions src/main/java/org/breedinginsight/brapi/v2/dao/BrAPIStudyDAO.java
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Expand Up @@ -137,6 +137,7 @@ public List<BrAPIStudy> getStudiesByName(List<String> studyNames, Program progra
}

public List<BrAPIStudy> getStudiesByExperimentID(@NotNull UUID experimentId, Program program) throws ApiException {
// TODO: This should look up on trialDbId, and the trialDbId should be passed thru
BrAPIStudySearchRequest studySearch = new BrAPIStudySearchRequest();
studySearch.programDbIds(List.of(program.getBrapiProgram().getProgramDbId()));
studySearch.addExternalReferenceIdsItem(experimentId.toString());
Expand Down Expand Up @@ -167,11 +168,7 @@ public List<BrAPIStudy> getStudiesByEnvironmentIds(@NotNull Collection<UUID> env
public List<BrAPIStudy> getStudiesByExperimentIds(@NotNull Collection<UUID> experimentIds, Program program) throws ApiException {
BrAPIStudySearchRequest studySearch = new BrAPIStudySearchRequest();
studySearch.programDbIds(List.of(program.getBrapiProgram().getProgramDbId()));
// Add all experimentIds as xref ID search terms.
for (UUID experimentId : experimentIds) {
studySearch.addExternalReferenceIdsItem(experimentId.toString());
}
studySearch.addExternalReferenceSourcesItem(Utilities.generateReferenceSource(referenceSource, ExternalReferenceSource.TRIALS));
studySearch.trialDbIds(experimentIds.stream().map(UUID::toString).collect(Collectors.toList()));
StudiesApi api = brAPIEndpointProvider.get(programDAO.getCoreClient(program.getId()), StudiesApi.class);
return new ArrayList<>(processStudyForDisplay(brAPIDAOUtil.search(
api::searchStudiesPost,
Expand Down
4 changes: 0 additions & 4 deletions src/main/java/org/breedinginsight/brapi/v2/dao/BrAPITrialDAO.java
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Expand Up @@ -40,13 +40,9 @@ List<BrAPITrial> createBrAPITrials(List<BrAPITrial> brAPITrialList, UUID program

Optional<BrAPITrial> getTrialById(UUID programId, UUID trialId) throws ApiException, DoesNotExistException;

Optional<BrAPITrial> getTrialByDbId(String trialDbId, Program program) throws ApiException;

List<BrAPITrial> getTrialsByDbIds(Collection<String> trialDbIds, Program program) throws ApiException;

List<BrAPITrial> getTrialsByExperimentIds(Collection<UUID> experimentIds, Program program) throws ApiException;

void deleteBrAPITrial(Program program, BrAPITrial trial, boolean hard) throws ApiException;

void repopulateCache(UUID programId);
}
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