[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ ci:
 
 repos:
     - repo: https://github.com/pre-commit/pre-commit-hooks
-      rev: v4.5.0
+      rev: v6.0.0
       hooks:
           - id: check-docstring-first
           - id: check-executables-have-shebangs
@@ -17,23 +17,23 @@ repos:
             args: [--fix=lf]
           - id: requirements-txt-fixer
           - id: trailing-whitespace
-    - repo: https://github.com/charliermarsh/ruff-pre-commit
-      rev: v0.3.0
+    - repo: https://github.com/astral-sh/ruff-pre-commit
+      rev: v0.14.14
       hooks:
         - id: ruff
-    - repo: https://github.com/psf/black
-      rev: 24.2.0
+    - repo: https://github.com/psf/black-pre-commit-mirror
+      rev: 26.1.0
       hooks:
           - id: black
     - repo: https://github.com/pre-commit/mirrors-mypy
-      rev: v1.8.0
+      rev: v1.19.1
       hooks:
           - id: mypy
             exclude: "village/pybpodapi/.*"
             additional_dependencies:
                 - types-setuptools
     - repo: https://github.com/mgedmin/check-manifest
-      rev: "0.49"
+      rev: "0.51"
       hooks:
           - id: check-manifest
             args: [--no-build-isolation]
@@ -42,7 +42,7 @@ repos:
             - wheel
     - repo: https://github.com/codespell-project/codespell
       # Configuration for codespell is in pyproject.toml
-      rev: v2.2.6
+      rev: v2.4.1
       hooks:
       - id: codespell
         additional_dependencies:

village/custom_classes/training_protocol_base.py

@@ -52,11 +52,9 @@ def check_variables(self) -> None:
         if self.settings.next_task == "-1":
             raise TrainingError("The variable next_task is required (must be a string)")
         if self.settings.refractory_period < 0:
-            raise TrainingError(
-                """
+            raise TrainingError("""
                 The variable refractory_period is required (must be a positive integer)
-                """
-            )
+                """)
         if self.settings.minimum_duration < 0:
             raise TrainingError(
                 "The variable minimum_duration is required (must be a positive float)"

village/pybpodapi/bpod/bpod_base.py

@@ -131,32 +131,24 @@ def open(self):
         try:
             val = self._bpodcom_handshake()
         except Exception:
-            raise BpodErrorException(
-                """Error: Bpod failed to confirm connectivity.
-                Please reset Bpod and try again."""
-            )
+            raise BpodErrorException("""Error: Bpod failed to confirm connectivity.
+                Please reset Bpod and try again.""")
 
         if not val:
-            raise BpodErrorException(
-                """Error: Bpod failed to confirm connectivity.
-                Please reset Bpod and try again."""
-            )
+            raise BpodErrorException("""Error: Bpod failed to confirm connectivity.
+                Please reset Bpod and try again.""")
 
         # check the firmware version
         firmware_version, machine_type = self._bpodcom_firmware_version()
 
         if firmware_version < settings.get("BPOD_TARGET_FIRMWARE"):
-            raise BpodErrorException(
-                """Error: Old firmware detected.
-                Please update Bpod firmware to version 22 and try again."""
-            )
+            raise BpodErrorException("""Error: Old firmware detected.
+                Please update Bpod firmware to version 22 and try again.""")
 
         if firmware_version > settings.get("BPOD_TARGET_FIRMWARE"):
             print("Firmware version is new: ", firmware_version)
-            raise BpodErrorException(
-                """Error: Future firmware detected.
-                Please change Bpod firmware to version 22 and try again."""
-            )
+            raise BpodErrorException("""Error: Future firmware detected.
+                Please change Bpod firmware to version 22 and try again.""")
 
         self._hardware.firmware_version = firmware_version
         self._hardware.machine_type = machine_type

village/pybpodapi/state_machine/state_machine_builder.py

@@ -165,7 +165,7 @@ def build_message(self):
                 tmp += [transition[0]]
                 dest_state = transition[1]
                 tmp += [
-                    (self.total_states_added if math.isnan(dest_state) else dest_state)
+                    self.total_states_added if math.isnan(dest_state) else dest_state
                 ]
         message += tmp
         logger.debug("INPUT MATRIX: %s", tmp)
@@ -202,7 +202,7 @@ def build_message(self):
                     - self.hardware.channels.events_positions.globalTimerStart
                 ]
                 tmp += [
-                    (self.total_states_added if math.isnan(dest_state) else dest_state)
+                    self.total_states_added if math.isnan(dest_state) else dest_state
                 ]
         message += tmp
         logger.debug("GLOBAL_TIMER_START_MATRIX: %s", tmp)
@@ -222,7 +222,7 @@ def build_message(self):
                     - self.hardware.channels.events_positions.globalTimerEnd
                 ]
                 tmp += [
-                    (self.total_states_added if math.isnan(dest_state) else dest_state)
+                    self.total_states_added if math.isnan(dest_state) else dest_state
                 ]
         message += tmp
         logger.debug("GLOBAL_TIMER_END_MATRIX: %s", tmp)
@@ -242,7 +242,7 @@ def build_message(self):
                     - self.hardware.channels.events_positions.globalCounter
                 ]
                 tmp += [
-                    (self.total_states_added if math.isnan(dest_state) else dest_state)
+                    self.total_states_added if math.isnan(dest_state) else dest_state
                 ]
         message += tmp
         logger.debug("GLOBAL_COUNTER_MATRIX: %s", tmp)
@@ -261,7 +261,7 @@ def build_message(self):
                     transition[0] - self.hardware.channels.events_positions.condition
                 ]
                 tmp += [
-                    (self.total_states_added if math.isnan(dest_state) else dest_state)
+                    self.total_states_added if math.isnan(dest_state) else dest_state
                 ]
 
         message += tmp

village/scripts/parse_bpod_messages.py

@@ -51,7 +51,7 @@ def parse_input_to_tuple_override(msg: str) -> tuple[str, int, int]:
 
 
 def parse_output_to_tuple_override(
-    message: str | tuple[str, int]
+    message: str | tuple[str, int],
 ) -> tuple[str, Any, int]:
     """Parses a Bpod output message into a structured tuple.