Releases: BioComputingUP/idpo
Releases · BioComputingUP/idpo
v2026-05-14 Release
What's Changed
Full Changelog: v2026-05-05...v2026-05-14
v2026-05-05 Release
What's Changed
- Update issue templates by @XimeAixa in #22
- Fix import issues (IAO/GO) by @XimeAixa in #24
- Add material entity branch: protein, compound, condensate, and related classes by @XimeAixa in #25
- Restructure quality branch: rename state terms and update definitions by @XimeAixa in #26
- Restructure process branch: rename transition terms and update definitions by @XimeAixa in #27
- Restructure function and role branches by @XimeAixa in #28
- Pre release cleanup (2026/05) by @XimeAixa in #29
- Release 2025-05-05 by @XimeAixa in #30
Full Changelog: v2025-10-01...v2026-05-05
v2025-10-01 Release
What's Changed
- Add state/transition, material states, refactor disorder function, update object properties by @XimeAixa in #14
- Add BFO roots for
structural stateandstructural transitionby @cthoyt in #11 - Standardize labels, add LLPS abbreviation by @XimeAixa in #16
- New synonyms added by @XimeAixa in #17
- BFO root added for disorder function by @XimeAixa in #18
- Code of Conduct creation by @XimeAixa in #19
- Fix labels by @XimeAixa in #20
Full Changelog: v2025-09-10...v2025-10-01
v2025-09-10 Release
What's Changed
Push IDPO version (new release) based on Peter Tompa's comments in #13
- New terms were added based on the community's and Peter Tompa's suggestions.
- New definitions and definition sources were added for all the terms.
- Exact, narrow, broad and related synonyms were added for some terms.
- Term IDs were changed from five to seven digits.
- Some terms were mapped to GO terms with the annotation
rdfs:seeAlso.
Full Changelog: v2025-06-01...v2025-09-10
v2025-06-01 Release
What's Changed
- Push IDPO version 0.3.1 in #8
- The self-interaction term was added (IDPO:00511). Self-assembly (IDPO:00508) is now a brother term of self-regulatory activity (IDPO:00505) instead of its child.
Full Changelog: v2022-03-03...v2025-06-01
v2022-03-03 Release
What's Changed
- Push IDPO version 0.3.0 in #5
- GO terms were removed from the ontology
- pre-molten globule to molten globule and molten globule to pre-molten globule terms changed parent terms (now is_a: IDPO:00050 and is_a: IDPO:00056, respectively)
A mapping file from v0.1.0 to v0.3.0 is included in the files.
Changelog: v2022-01-28...v2022-03-03
v2022-01-28 Release
What's Changed
- Push IDPO version 0.2.1 in #4
Modified Items
- Renamed several terms from "regulation of X" to "X display site" for phosphorylation, acetylation, methylation, glycosylation, ubiquitination, fatty acylation, myristoylation, palmitoylation, limited proteolysis, and ADP-ribosylation.
- Changed parent terms (is_a) for:
molecular function activator activity and molecular function inhibitor activity (now is_a: IDPO:00510)
toxin sequestering activity (now is_a: IDPO:00519)
sequestering of metal ion (now is_a: IDPO:00518) - Added definitions to many structural transition terms (e.g., disorder to order, molten globule to order, etc.).
Added Items
- Many new terms related to viral processes and structural transitions, including:
Toxin activity, response to host immune response, evasion of host immune response, positive regulation of nuclease activity, catalytic activity, viral process, viral latency, viral life cycle, viral entry into host cell, viral genome integration into host DNA, viral release from host cell, virion assembly, viral budding, viral capsid assembly, viral genome maturation, viral genome packaging, viral head-tail joining, viral tail assembly, viral gene expression, viral protein processing, viral transcription, viral translation, modulation by virus of host process, regulation of proteolysis, regulation of protein phosphorylation, viral genome replication, modulation by virus of host cell cycle, release from viral latency, RNA polymerase activity, DNA polymerase activity. - New structural transition terms: PTM-induced disorder/order transitions, pH-dependent, temperature-dependent, pressure-dependent, redox-dependent transitions (both disorder to order and order to disorder).
Changelog: v2021-09-01...v2022-01-28
v2021-09-01 Release
What's Changed
- Push IDPO version 0.2 in #3
- The mapping file between the versions v0.1.0 and v0.2.0 has been attached.
Changelog: v2019-08-01...v2021-09-01