Tools for single cell analysis

single cell integration based on scanpy: scanpy_integration_pipeline_v1.1.1.py

single cell integration based on seurat: a1.3.seurat_harmony_cao.R

PAGA analysis script: PAGA_pipeline_v1.1.py

single cell cell type identification by scHCL run_scHCL_sc.R

plot 3D Umap: plot_3D_umap.R