Adding a Fish Dataset

docs/foraging/Fish/clean_ipynb_conflicts.py

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+import sys
+
+def resolve_git_conflicts(ipynb_path, output_path=None):
+    if output_path is None:
+        output_path = ipynb_path  # Overwrite in place if no output path is given
+
+    with open(ipynb_path, 'r', encoding='utf-8') as f:
+        lines = f.readlines()
+
+    cleaned_lines = []
+    in_conflict = False
+    keep_lines = False
+
+    for line in lines:
+        if line.startswith("<<<<<<<"):
+            in_conflict = True
+            keep_lines = False
+            continue
+        elif line.startswith("======="):
+            keep_lines = True  # Start keeping the bottom version
+            continue
+        elif line.startswith(">>>>>>>"):
+            in_conflict = False
+            keep_lines = False
+            continue
+
+        if not in_conflict or keep_lines:
+            cleaned_lines.append(line)
+
+    with open(output_path, 'w', encoding='utf-8') as f:
+        f.writelines(cleaned_lines)
+
+    print(f"Conflicts resolved. Clean file saved to: {output_path}")
+
+# Example usage:
+# resolve_git_conflicts("path/to/notebook.ipynb")
+
+if __name__ == "__main__":
+    if len(sys.argv) < 2:
+        print("Usage: python clean_ipynb_conflicts.py notebook.ipynb [output.ipynb]")
+    else:
+        resolve_git_conflicts(sys.argv[1], sys.argv[2] if len(sys.argv) > 2 else None)