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Dev#605

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snelliott merged 14 commits intoAuto-Mech:devfrom
snelliott:dev
Apr 9, 2026
Merged

Dev#605
snelliott merged 14 commits intoAuto-Mech:devfrom
snelliott:dev

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snelliott added 14 commits April 7, 2026 13:58
   multiple rid/cid to save by implenting two improvements
   (1) the check to see if another job is running this init_geom
   now checks not only for running jobs, but for very recently finished jobs
   (2) completed init geoms now go throught the same save_conformer
   procedure that conf_samp does, that ensures a newly optimized
   geometry is unique before saving it (and in doing so places
   it in correct rid)
- conformer sampling (not puckering sampling) is less likely to result
  in new rids. It was deciding that the slight twists due to varying
  interactions of the different  torsional  configurations (of the non-ring
  (dihedrals) were significant enough to label them as a new rid. We've
  doubled that threshold now to have them be the same rid as long as the
  angles are within 0.2 angstrom (rng_loc_for_geo)
- I've done a lot of clean up: improved comments, reduction in redundant code
  snippets, began adding type annotations
make the CONF/conf.t.xyz only have the lowest conformation for each rid
make the CONF/conf.t.xyz only have the lowest conformation for each rid
an initial conformer is running in another process
running check desynchronizer to use pid)
(1) lvl1 = 2 * mylvlkey
(2) lvl1 = 2,mylvlkey
(3) lvl1 = 2 mylvlkey
@snelliott snelliott merged commit f3a465b into Auto-Mech:dev Apr 9, 2026
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