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Issues with deprecated snippets of command

Status: Open.

#40 In ArnaudDroitLab/metagene2;

· officialnaturalist opened on Oct 26, 2025

Normalize BAM coverages by total reads within each sample

Status: Open.

#39 In ArnaudDroitLab/metagene2;

· aliciagallego opened on Jan 22, 2024

Select specific BAM files and regions for plotting

Status: Open.

#38 In ArnaudDroitLab/metagene2;

· aliciagallego opened on Jan 15, 2024

Outliers removal

Status: Open.

#37 In ArnaudDroitLab/metagene2;

· aliciagallego opened on Jan 15, 2024

Coverage and normalization

Status: Open.

#36 In ArnaudDroitLab/metagene2;

· aliciagallego opened on Jan 15, 2024

How to add TSS and TES on metagene plots for RIP-seq data?

Status: Open.

#35 In ArnaudDroitLab/metagene2;

· MolyWang opened on Dec 31, 2023

error when set padding_size

Status: Open.

#34 In ArnaudDroitLab/metagene2;

· yuhongning opened on Dec 15, 2021

mg$produce_metagene design and syntax for

Status: Open.

#33 In ArnaudDroitLab/metagene2;

· bumproo opened on Jun 30, 2021

Cannot set design=NULL from produce_metagene

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#27 In ArnaudDroitLab/metagene2;

· ericfournier2 opened on Dec 9, 2019

BAM existence is checked even when they are not needed

bugSomething isn't workingSomething isn't working

enhancementNew feature or requestNew feature or request

Status: Open.

#22 In ArnaudDroitLab/metagene2;

· ericfournier2 opened on Oct 24, 2019

Find a way to make paths in vignette more readable.

documentationDocumentation fixes or improvementsDocumentation fixes or improvements

enhancementNew feature or requestNew feature or request

Status: Open.

#15 In ArnaudDroitLab/metagene2;

· ericfournier2 opened on Apr 4, 2019

extend_read should not shrink genes.

bugSomething isn't workingSomething isn't working

Status: Open.

#10 In ArnaudDroitLab/metagene2;

· ericfournier2 opened on Mar 23, 2019