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@Sun-flow Sun-flow commented May 1, 2024

closes AllenNeuralDynamics/aind-data-migration-scripts#391
closes unmigrated issue #86 in aind-data-migration-scripts.

This script parses through 3 files from the exaspim team to add SpecimenProcedures for a number of subjects, as well as update their existing SubjectProcedures with their injection materials and correct protocol id (if there is one).

Most of this information was sourced via Naveen Ouellette.

@Sun-flow Sun-flow requested review from dyf and saskiad May 1, 2024 16:59
@Sun-flow Sun-flow self-assigned this May 1, 2024
@mekhlakapoor
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@Sun-flow @dyf @saskiad @jtyoung84 Is this branch still being worked on? There shouldnt be this many files?

@jtyoung84
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@Sun-flow @dyf @saskiad @jtyoung84 Is this branch still being worked on? There shouldnt be this many files?

This repo is being sunsetted. I'll close out the PRs when I archive it.

@saskiad
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saskiad commented Jun 9, 2025

Please don't delete this PR until we have gotten exaspim metadata ingested. While this is probably a mess, I don't want to have to redo all of this work.

@jtyoung84
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Please don't delete this PR until we have gotten exaspim metadata ingested. While this is probably a mess, I don't want to have to redo all of this work.

Ok, but I think one of the issues was that this wasn't the correct repo for this code. It'd be nice to copy it to aind-data-migration-scripts or somewhere else.

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5 participants