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@vianamp vianamp commented Jan 24, 2026

The goal of this PR is to address the journal's request for testing some of our results against different sample sizes. Here, I implemented this by bootstrap resampling to produce 95% confidence interval for Pearson correlation coefficients. The results produced by this code are used in Supplementary Table 3. Statistical results for migration onset and EMT marker expression timing.

Here is an example of the data produced for SOX2 and formatted in the Table:

image

- Add print statement in io.load_image_analysis_extracted_features to verify source path.

- Add status update in Analysis_tools.run_all_analyses to indicate when analysis begins.
@vianamp vianamp requested review from pgarrison and smishra3 January 24, 2026 03:27
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