Cebrafish_videos

Measure the temporal evolution of cebrafish videos

User: Marta Fernandez - Laura Martinez

Experiment 1: Number of contractions in videos

A cebrafish contracts, I want to measure the number of times it does and find patterns. Maybe parameters of the tail are to be measure too

Image Segmentation

I use a macro that segments the fish using phantas. Several parameters are measured

Data Analysis

Plot of Time series using orange

Experiment 2: Tracking of the fish in a well

The fish moves freely. I measure the distance it goes dows using trackmate. To detect the fish, might be helpful to substract the edges of the well. To do so, substrac the median projection from the original video

Image Segmentation

Macro process the images previous to the tracking

Experiment 3: Movement of the tail

Marta needs videos from a high speed acquisition camera

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