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Abdeltoto/README.md


Typing SVG



   





🏆 CERTIFICATIONS & CREDENTIALS



IBM     



🤖 IBM RAG & Agentic AI Professional Certificate

8-Course Specialization | Advanced Level




🔗 AI Orchestration               ✅
🤖 Agentic Workflows & Systems    ✅
📚 Retrieval-Augmented Generation  ✅
🧠 LLM Application Development    ✅
⚡ Function Calling & Tools       ✅
🗃️ Vector Stores & Embeddings     ✅
🎭 Multimodal Prompts             ✅
🔌 Model Context Protocol (MCP)   ✅
✏️ Prompt Engineering             ✅
🛡️ Responsible AI                 ✅
🐝 BeeAI Framework               ✅
🔄 AG2 (AutoGen 2)                ✅
📊 Multi-Agent Systems            ✅
🏗️ Production Deployment          ✅
📡 Streaming & Batching           ✅
🔍 Hybrid Search & Re-ranking     ✅





Harvard University



🎓 CS50x

Introduction to Computer Science




💡 Computational Thinking         ✅
🧮 Algorithms & Complexity        ✅
📦 Data Structures                 ✅
🔧 Memory Management (C)          ✅
🐍 Python Programming             ✅
🗄️ Databases & SQL                ✅
🌐 Web Dev (HTML/CSS/JS)          ✅
🔒 Security & Encryption          ✅
⚙️ Software Engineering           ✅
🎯 Final Project                   ✅




Harvard University



🐍 CS50P

Introduction to Programming with Python




🐍 Functions & Variables          ✅
🔀 Conditionals & Loops           ✅
⚠️ Exceptions & Error Handling    ✅
📦 Libraries, Modules & Packages  ✅
🧪 Unit Testing (pytest)          ✅
📂 File I/O & CSV                  ✅
🔤 Regular Expressions (re)       ✅
🏗️ OOP: Classes & Inheritance     ✅
🎨 Decorators & Properties        ✅
🌐 APIs & Third-Party Libs        ✅




timeline
    title 🎯 Certification Journey
    2025 : 🎓 Harvard CS50x — Computer Science
         : 🐍 Harvard CS50P — Python Programming
    2026 : 🤖 IBM RAG & Agentic AI — 8 Courses
         : 🚀 More coming soon...
Loading

👤 WHO AM I


const ABDEL_ATIA = {

    // 🎓 Academic Background
    education: {
        degrees: ["PhD", "DMV (Docteur en Medecine Veterinaire)"],
        specializations: ["Biopharmaceutique", "Sciences Veterinaires"],
        certifications: [
            "IBM RAG & Agentic AI (8 courses)",
            "Harvard CS50x",
            "Harvard CS50P"
        ],
        research: "Recherche avancee en sante animale & molecules"
    },

    // 💻 Code DNA
    coding: {
        started: "Depuis mon jeune age 👦",
        passion: "Autodidacte passionne depuis toujours",
        evolution: "BASIC → C → Python → AI/ML → RAG & Agents",
        years_of_experience: "15+ ans"
    },

    // 🌍 Life in Numbers
    stats: {
        countries_visited: 64,
        continents_explored: 4,
        papers_read_yearly: 300,
        coffee_dependency: "CRITICAL ☕"
    },

    motto: "Automate the boring. Amplify the human.",
    origin: "Codeur enfant → Veterinaire → PhD → AI Architect"

} as const;



🏫 Certified by


IBM



Harvard University



🌍 64 Countries
📚 300+ Papers/Year
☕ ∞ Coffees
👓 15+ Years Coding


🔬 Mon Parcours Unique — De l'enfant codeur a l'architecte IA

🧒 L'Origine

+ 👦 Passion pour le code des l'enfance
+ 🖥️ Autodidacte par curiosite
+ 📚 Du BASIC aux langages modernes

🎓 L'Academique

+ 🦁 DMV — Lions soignes en Afrique
+ 🧬 Biopharmacien — Recherche moleculaire
+ 📜 PhD — Sciences biopharmaceutiques

🚀 L'Evolution IA

+ 💻 Fusion Bio + Code
+ 🤖 AI Systems Engineer
+ 🎯 IBM + Harvard (2025-2026)

Le Fil Rouge : Le code m'accompagne depuis l'enfance. La biologie m'a donne la rigueur scientifique. L'IA me permet de tout fusionner.

Le Super-pouvoir : Je parle le langage des cellules, celui du Python, ET celui des LLMs.


🛠️ TECH ARSENAL






🤖 AI Frameworks & Agentic Systems




LangChain LangGraph LlamaIndex CrewAI AutoGen BeeAI Semantic Kernel Haystack


HuggingFace Transformers OpenAI API Pydantic MCP Tavily

🧠 LLM Models & APIs




GPT-4o o1 Claude Gemini Llama Mistral DeepSeek Cohere Groq

🗄️ Vector DBs & Retrieval




Pinecone ChromaDB Weaviate Qdrant FAISS Milvus Neo4j


Cohere Rerank tiktoken Unstructured Nomic BGE-M3

🐍 Python Ecosystem




Python Pydantic pytest Poetry pip Conda


Regex Requests httpx aiohttp BeautifulSoup spaCy


Black Ruff mypy pre-commit

📊 Data Science & Machine Learning




PyTorch TensorFlow scikit-learn Keras ONNX


Pandas NumPy SciPy Jupyter Matplotlib Plotly

🌐 Web, APIs & UI Frameworks




FastAPI Flask Django Streamlit Gradio Chainlit


HTML5 CSS3 JavaScript TypeScript gRPC WebSockets

⚙️ Infrastructure & Cloud




Docker Docker Compose Kubernetes AWS GCP Azure


Terraform GitHub Actions Vercel Render Linux Nginx


Git GitHub VS Code Cursor Bash C

📡 Databases, Monitoring & MLOps




PostgreSQL MongoDB SQLite Redis Supabase SQL


LangSmith Langfuse W&B MLflow Airflow DVC

🧬 Bioinformatics & Research (PhD)




NCBI BLAST SILVA 16S rRNA FASTQ Paired-End Biopython

PERMANOVA ANOSIM PCoA Bray-Curtis Shannon Rarefaction

PubMed API NCBI Entrez RDKit R SPSS LaTeX BIOM Zotero



🎯 DEEP EXPERTISE


class CertifiedAIExpert:
    """
    🏆 IBM RAG & Agentic AI (8 courses)
    🎓 Harvard CS50x — Computer Science
    🐍 Harvard CS50P — Python Programming
    """

    def __init__(self):

        # ═══ IBM RAG & AGENTIC AI ═══
        self.rag = {
            "chunking":   ["semantic", "recursive", "agentic", "late chunking"],
            "embeddings": ["OpenAI ada-002", "Cohere", "BGE-M3", "Nomic"],
            "retrieval":  ["hybrid search", "HyDE", "re-ranking", "MMR", "RAPTOR"],
            "generation": ["RAG fusion", "CRAG", "self-RAG", "corrective RAG"]
        }

        self.agents = {
            "frameworks":    ["LangGraph", "CrewAI", "AutoGen/AG2", "BeeAI", "Semantic Kernel"],
            "patterns":      ["ReAct", "Plan-Execute", "Tree of Thoughts", "Reflexion"],
            "orchestration": ["multi-agent debate", "hierarchical agents", "swarm"],
            "protocols":     ["MCP (Model Context Protocol)", "function calling", "tool use"]
        }

        # ═══ HARVARD CS50x ═══
        self.cs_foundations = {
            "algorithms":      ["sorting", "searching", "graph traversal", "dynamic programming"],
            "data_structures": ["arrays", "linked lists", "trees", "hash tables", "tries"],
            "languages":       ["C", "Python", "SQL", "JavaScript", "HTML/CSS"],
            "concepts":        ["memory management", "pointers", "encryption", "TCP/IP"]
        }

        # ═══ HARVARD CS50P ═══
        self.python_mastery = {
            "core":      ["functions", "variables", "conditionals", "loops", "exceptions"],
            "advanced":  ["OOP", "inheritance", "decorators", "properties", "generators"],
            "testing":   ["unit testing", "pytest", "assert", "debugging"],
            "practical": ["regex", "file I/O", "CSV", "APIs", "third-party libraries"]
        }

        # ═══ 🧬 BIOINFORMATICS (SeqDNA 16S) ═══
        self.bioinformatics = {
            "sequencing":    ["16S rRNA metabarcoding", "FASTQ parsing", "Phred quality"],
            "assembly":      ["paired-end R1+R2", "consensus scoring", "overlap merge"],
            "identification":["NCBI BLAST+ (megablast)", "SILVA 138.2", "k-mer indexing"],
            "diversity":     ["Shannon", "Simpson", "Chao1", "Bray-Curtis", "Jaccard"],
            "statistics":    ["PERMANOVA", "ANOSIM", "PCoA ordination", "rarefaction"],
            "pipelines":     ["Biopython", "BIOM 1.0 export", "PDF reports", "Flask SaaS"]
        }

        # ═══ PRODUCTION ═══
        self.production = {
            "api":          ["FastAPI", "gRPC", "WebSockets", "streaming"],
            "infra":        ["Docker", "Kubernetes", "AWS", "GCP"],
            "monitoring":   ["LangSmith", "Langfuse", "Weights & Biases"],
            "optimization": ["caching", "batching", "quantization", "guardrails"]
        }

    def deliver(self) -> dict:
        return {
            "🎯 RAG Systems":    "Documents → Knowledge → Action",
            "🤖 AI Agents":      "Autonomous reasoning & execution",
            "🧬 Bioinformatics": "FASTQ → Species identification",
            "🎓 CS Foundations":  "Harvard-validated fundamentals",
            "🐍 Python":         "Deep mastery, tested & certified",
            "⚡ Production":     "Scalable, monitored, responsible"
        }


🚀 PROJECTS IN PRODUCTION


🔍 Enterprise RAG Platform

Stack:
  - LangChain + LangGraph
  - Pinecone + Cohere Rerank
  - GPT-4 Turbo

Features:
  ✅ Multi-source ingestion
  ✅ Hybrid search (dense + sparse)
  ✅ Self-correcting RAG
  ✅ Citation & provenance

Impact: "90% faster research"

🤖 Multi-Agent Research System

Stack:
  - LangGraph + CrewAI
  - Claude 3.5 + GPT-4
  - Custom Tools + MCP

Agents:
  ✅ Researcher (literature)
  ✅ Analyst (data)
  ✅ Writer (synthesis)
  ✅ Critic (review)

Impact: "20h/week automated"

🧬 SeqDNA 16S — DNA Sequencing Platform

Stack:
  - Python + Flask (SPA)
  - NCBI BLAST+ & SILVA 138.2
  - Chart.js + fpdf2 reports
  - SQLite + Auth multi-users

Features:
  ✅ 16S rRNA metabarcoding pipeline
  ✅ Paired-end R1+R2 assembly (Phred)
  ✅ PERMANOVA, ANOSIM, PCoA, Bray-Curtis
  ✅ Rarefaction curves & taxonomic trees
  ✅ PDF reports + BIOM 1.0 export
  ✅ SaaS: Free / Pro / Admin plans

Impact: "FASTQ → Species ID in minutes"

⚡ Intelligent Pipelines

Stack:
  - Airflow + Docker
  - PostgreSQL + Redis
  - Custom monitoring

Features:
  ✅ Self-healing workflows
  ✅ Anomaly detection
  ✅ Auto-scaling
  ✅ Real-time alerts

Impact: "Zero manual intervention"


🌍 GLOBAL FOOTPRINT





🌍 64

Countries

🗺️ 4

Continents

☕ ∞

Coffees

📚 300+

Papers/Year

🏆 3

Certifications

« Le monde est mon bureau. Le WiFi, ma seule contrainte. »



📊 GITHUB ANALYTICS



  









  


💡 PHILOSOPHY


class DevPhilosophy:

    RULES = [
        "If you do it more than twice → automate it",
        "Clarity beats cleverness. Always.",
        "Ship fast, iterate faster, learn fastest",
        "Good code is code that can be deleted",
        "The best prompt is the one you never have to write twice"
    ]

    MOTTO = "Au nom du Prompt, du Modele et de la Sainte Iteration 🙏"

    def daily_standup(self) -> str:
        return """
        ☕ Coffee.init()
        💻 Code.write()
        🐛 Bugs.hunt()
        🚀 Features.ship()
        📚 Papers.read()
        🔄 Repeat()
        """

⚠️ KNOWN BUGS

- ⚠️ CaffeineDependency: System unstable below 3 cups
- ⚠️ TabOverflow: 50+ browser tabs is "normal"
- ⚠️ RefactorLoop: "Quick fix" → 5h rewrite
- ⚠️ CertificationAddiction: Can't stop collecting credentials
+ ✅ RAGObsession: Building retrieval systems 24/7 (working as intended)
+ ✅ AgentAddiction: Creating AI agents for everything (feature, not bug)
+ ✅ HarvardEffect: Now explains everything with O(n) notation (feature)


📡 LET'S CONNECT




Typing SVG



       




         



Built with ☕ + 🐍 + 🤖

Certified by   IBM   +   Harvard


Last update: February 2026

Aucun GPU n'a ete maltraite durant la creation de ce profil.



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