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Feature/full run#16

Merged
kfang4 merged 14 commits into
mainfrom
feature/full-run
Aug 8, 2025
Merged

Feature/full run#16
kfang4 merged 14 commits into
mainfrom
feature/full-run

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@kfang4

@kfang4 kfang4 commented Aug 7, 2025

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Description

Preparing for upcoming Major Release. Key changes made:

  • Remove maxRetries
  • Rename workflow by removing 'pmdbs' since it runs through human and non-human data
  • Update batch detection instead of using the last string split
  • Specify nclust in Harmony if there are a small # of cells in the dataset (<100)

Dependencies (Issues/PRs)

Type of Change

  • Bug fix
  • New feature
  • Documentation

Task Checklist

  • documentation updated
  • miniwdl check passed
  • womtool validate passed

Testing

Workflow Engine Tested On

  • HealthOmics, Amazon Web Services
  • Google Cloud Platform, Cromwell
  • Google Cloud Platform
  • Microsoft Azure, Cromwell
  • GA4GH Workflow Execution Service, On Premises and Multi Cloud
  • Other

Successful Workflow IDs

  • ae0297c7-c255-42ad-b59b-d641ab728ed0
  • 5e99ef14-ce62-400f-88fe-c8f001dcdfce
  • 9c29ede7-f949-48bc-a3eb-6db2d6e21b8c

@kfang4 kfang4 requested a review from hkeward August 7, 2025 20:52

@hkeward hkeward left a comment

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LGTM!

@kfang4 kfang4 merged commit 3dce5e8 into main Aug 8, 2025
@kfang4 kfang4 deleted the feature/full-run branch August 8, 2025 17:53
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2 participants