Step 1: Set up LUT file. -one row per subject being run -columns: one = file name, two = axial length, three = image width in pixels, four = image height in pixels, five = nominal scan length in microns, six = nominal scan depth/height in microns
Step 2: Open and run Retinal_Thickness_Analysis.m -Select orientation of segmentations -Select directory containing subject folders of the reformed csv files (ending in _data.csv) -Select LUT file
Step 3: Window will pop up with segmentation plot for first subject. Select the center of the predicted fovea. This step will repeat for all subjects. -Output: [filename]_stats.csv (one per subject), [filename]_Retinal_Layers_Thickness.csv (one per subject),