GeneProt marker gene/protein metagenomic sequencing data manipulation and ecological assessment expert system
The automated assessment of water quality via saprobity index evaluation by next-generation sequencing of genetic markers of hydrobionts
Created by Antoniy Elias Sverdrup © Anthony&Co. Media Production 2017-2025. All rights reserved.
This is a beta-version of this software.
You may encounter previously unknown errors or unintended behaviour.
Please report found issues to https://github.com/A-Sverdrup/water-expert-system/issues
This program was developed and tested on Windows.
This program has rudimentary MacOS/Linux/BSD support, but was never tested on those systems and may be broken.
non-free-threaded Python version 3.12+.
Free-threaded versions areincompatible with required dependency pandas.
python3 -m pip install numpy
python3 -m pip install pandas=2.2.3
python3 -m pip install Bio
BLAST+ package: blastn, makeblastdb (included) 7-zip: 7z.exe / 7zz (included, optional)