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Expand Up @@ -123,6 +123,8 @@ ROAR344_fergusonii.fasta ['trpA', 'trpBA', 'aesI'] ['-', '-', '-', '-'] [] Fergu
* 3rd column : In the quadruplex column you will find a representation of presence(+)/absence(-) for the 4 genes described in [Clermont O, Christenson JK, Denamur E, Gordon DM. The Clermont Escherichia coli phylo-typing method revisited: improvement of specificity and detection of new phylo-groups](https://www.ncbi.nlm.nih.gov/pubmed/23757131). Respectively, arpA, chuA, yjaA and TspE4.C2 .
* 4th column : When the quadruplex PCR give an ambiguity, this column show the alleles specific for groups C and E.
* 5th column : final conclusion about phylogroup.
* 6th column : mash group of the sample. This prediction is only informative and is not used for phylogroup assignation.


## Citing
Please cite:
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