Useful documentation:
https://www.gnu.org/software/gsl/doc/html/interp.html
https://www.fftw.org/index.html 

If there are ever problems with downloading extensions, libraries, or running the program, it is probbably a security thing. 
please temporarily disable it on your computer or add the necessary exceptions to your security software/antivirus

VS Code Extensions:
    - C/C++ Extension Pack
    - C/C++ Compile Run
        - Follow steps on this to download TDM-GCC-64 for compiler. Do this step before moving forward.
            - Make sure that the path to download TDM is C:/<your path to code>/Matlab_to_C/Compile_Stuff/TDM-GCC-64
        - When installing TDM, there is a page with a dropdown to choose how to install. On that page:
            - Select C/C++ option from dropdown to install
            - Go to the gcc branch in the box below and expand it
            - Scroll down and check openmp

Necessary downloads:

MATLAB
    - Have it fully downloaded, logged in, and working (doesn't have to be running)
TDM-GCC
    - Follow instructions above

Note: All libraries are using x64 

For program to work on your computer:

    - Go to ./.vscode/tasks.json and edit the "env" "PATH" of the 'Run Matlab Visual Script' to match you computer
    - Go to ./Compile_Stuff/TDM-GCC-64/bin and edit path to the TDM compiler
    - Add your background data and normal data in the Input folder
    - Go to ./Input/input.txt and change the first line to match your path to the 'Input' directory
    - Go to ./Input/input.txt and change the second line to match what your .mat files are called
    - Go to ./Input/input.txt and change the third line to match what your background data is called
    - Press Ctr-Shft-B to use vs code tasks that compile and run the program. tasks.json explains how to use the terminal
    - Please don't have any other software/programs running while this is running, as it is ram intensive (atleast 40 GB needed (testing used DDR4 3200)).
    - Before running the program, modify the "#define" variables at the top of translation.c to match your setup. 
        - DO NOT CHANGE ANYTHING ELSE IN THAT FILE
    - The images produced by the matlab script when run via vs code tasks aren't interactable, run the script through matlab if you want to zoom in and stuff
        - go through the different images via clicking or key pressing
        - matlab doesn't have to be running


If code isn't working:
    - delete the msys64 folder in ./Compile_Stuff
    - https://www.msys2.org/
    - download installer and run
    - choose installation folder (C:/<your path to code>/Matlab_to_C/Compile_Stuff/msys64)
    - once downloaded, run UCRT64 shell
    - pacman -Syu
        - If it asks you to close terminal to complete installation, close then reopen terminal and run the command again
    - pacman -S mingw-w64-x86_64-gsl
    - pacman -S git
    - pacman -S mingw-w64-ucrt-x86_64-zlib
    - git clone git://git.code.sf.net/p/matio/matio
    - cd matio
    - git submodule update --init
    - export PATH="/c/<your path to code>/Matlab_to_C/Compile_Stuff/TDM-GCC-64/bin:$PATH"
    - pacman -S libtool
    - pacman -S automake
    - pacman -S autoconf m4
    - pacman -S make
    - ./autogen.sh
    - ./configure
    - make
    - make check
    - make install
    - Can close terminal