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fasta2.xml
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379 lines (378 loc) · 14.9 KB
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<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
<BlastOutput_program>blastn</BlastOutput_program>
<BlastOutput_version>BLASTN 2.7.1+</BlastOutput_version>
<BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
<BlastOutput_db>C:/Users/Christian/Desktop/RESearch/_database</BlastOutput_db>
<BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
<BlastOutput_query-def>NC_000913.3:c367510-366428 Escherichia coli str. K-12 substr. MG1655, complete genome</BlastOutput_query-def>
<BlastOutput_query-len>10</BlastOutput_query-len>
<BlastOutput_param>
<Parameters>
<Parameters_expect>10</Parameters_expect>
<Parameters_sc-match>1</Parameters_sc-match>
<Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
<Parameters_gap-open>5</Parameters_gap-open>
<Parameters_gap-extend>2</Parameters_gap-extend>
<Parameters_filter>L;m;</Parameters_filter>
</Parameters>
</BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
<Iteration_iter-num>1</Iteration_iter-num>
<Iteration_query-ID>Query_1</Iteration_query-ID>
<Iteration_query-def>NC_000913.3:c367510-366428 Escherichia coli str. K-12 substr. MG1655, complete genome</Iteration_query-def>
<Iteration_query-len>10</Iteration_query-len>
<Iteration_hits>
<Hit>
<Hit_num>1</Hit_num>
<Hit_id>YNR023W_AWRI1631</Hit_id>
<Hit_def>SNF12 ORF Verified [Sc strain AWRI1631] 73 kDa subunit of the SWI/SNF chromatin remodeling complex involved in transcriptional regulation; homolog of Rsc6p subunit of the RSC chromatin remodeling complex; deletion mutants are temperature-sensitive</Hit_def>
<Hit_accession>YNR023W_AWRI1631</Hit_accession>
<Hit_len>1701</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>1600</Hsp_hit-from>
<Hsp_hit-to>1609</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>2</Hit_num>
<Hit_id>YNL222W_AWRI1631</Hit_id>
<Hit_def>SSU72 ORF Verified [Sc strain AWRI1631] Transcription/RNA-processing factor that associates with TFIIB and cleavage/polyadenylation factor Pta1p; exhibits phosphatase activity on serine-5 of the RNA polymerase II C-terminal domain; affects start site selection in vivo</Hit_def>
<Hit_accession>YNL222W_AWRI1631</Hit_accession>
<Hit_len>621</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>97</Hsp_hit-from>
<Hsp_hit-to>106</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>3</Hit_num>
<Hit_id>YMR209C_AWRI1631</Hit_id>
<Hit_def>ORF Uncharacterized [Sc strain AWRI1631] Putative S-adenosylmethionine-dependent methyltransferase; YMR209C is not an essential gene</Hit_def>
<Hit_accession>YMR209C_AWRI1631</Hit_accession>
<Hit_len>1374</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>301</Hsp_hit-from>
<Hsp_hit-to>310</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>4</Hit_num>
<Hit_id>YLR262C_AWRI1631</Hit_id>
<Hit_def>YPT6 ORF Verified [Sc strain AWRI1631] Rab family GTPase, Ras-like GTP binding protein involved in the secretory pathway, required for fusion of endosome-derived vesicles with the late Golgi, maturation of the vacuolar carboxypeptidase Y; has similarity to the human GTPase, Rab6</Hit_def>
<Hit_accession>YLR262C_AWRI1631</Hit_accession>
<Hit_len>648</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>475</Hsp_hit-from>
<Hsp_hit-to>484</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>5</Hit_num>
<Hit_id>YLR261C_AWRI1631</Hit_id>
<Hit_def>VPS63 ORF Dubious [Sc strain AWRI1631] Dubious open reading frame, unlikely to encode a protein; not conserved in closely related Saccharomyces species; 98% of ORF overlaps the verified gene YPT6; deletion causes a vacuolar protein sorting defect</Hit_def>
<Hit_accession>YLR261C_AWRI1631</Hit_accession>
<Hit_len>327</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>147</Hsp_hit-from>
<Hsp_hit-to>156</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>6</Hit_num>
<Hit_id>YGR080W_AWRI1631</Hit_id>
<Hit_def>TWF1 ORF Verified [Sc strain AWRI1631] Twinfilin, highly conserved actin monomer-sequestering protein involved in regulation of the cortical actin cytoskeleton, composed of two cofilin-like regions, localizes actin monomers to sites of rapid filament assembly</Hit_def>
<Hit_accession>YGR080W_AWRI1631</Hit_accession>
<Hit_len>999</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>93</Hsp_hit-from>
<Hsp_hit-to>84</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>-1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>7</Hit_num>
<Hit_id>YGL067W_AWRI1631</Hit_id>
<Hit_def>NPY1 ORF Verified [Sc strain AWRI1631] NADH diphosphatase (pyrophosphatase), hydrolyzes the pyrophosphate linkage in NADH and related nucleotides; localizes to peroxisomes</Hit_def>
<Hit_accession>YGL067W_AWRI1631</Hit_accession>
<Hit_len>765</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>684</Hsp_hit-from>
<Hsp_hit-to>675</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>-1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>8</Hit_num>
<Hit_id>YDR375C_AWRI1631</Hit_id>
<Hit_def>BCS1 ORF Verified [Sc strain AWRI1631] Mitochondrial protein of the AAA ATPase family; has ATP-dependent chaperone activity; required for assembly of Rip1p and Qcr10p into cytochrome bc(1) complex; mutations in human homolog BCS1L are linked to neonatal mitochondrial diseases</Hit_def>
<Hit_accession>YDR375C_AWRI1631</Hit_accession>
<Hit_len>1371</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>1116</Hsp_hit-from>
<Hsp_hit-to>1125</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>9</Hit_num>
<Hit_id>YDR301W_AWRI1631</Hit_id>
<Hit_def>CFT1 ORF Verified [Sc strain AWRI1631] RNA-binding subunit of the mRNA cleavage and polyadenylation factor; involved in poly(A) site recognition and required for both pre-mRNA cleavage and polyadenylation, 51% sequence similarity with mammalian AAUAA-binding subunit of CPSF</Hit_def>
<Hit_accession>YDR301W_AWRI1631</Hit_accession>
<Hit_len>4074</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>3114</Hsp_hit-from>
<Hsp_hit-to>3105</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>-1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>10</Hit_num>
<Hit_id>YDR300C_AWRI1631</Hit_id>
<Hit_def>PRO1 ORF Verified [Sc strain AWRI1631] Gamma-glutamyl kinase, catalyzes the first step in proline biosynthesis</Hit_def>
<Hit_accession>YDR300C_AWRI1631</Hit_accession>
<Hit_len>891</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>832</Hsp_hit-from>
<Hsp_hit-to>841</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>11</Hit_num>
<Hit_id>YER132C_AWRI1631</Hit_id>
<Hit_def>PMD1 ORF Verified [Sc strain AWRI1631] Protein with an N-terminal kelch-like domain, putative negative regulator of early meiotic gene expression; required, with Mds3p, for growth under alkaline conditions</Hit_def>
<Hit_accession>YER132C_AWRI1631</Hit_accession>
<Hit_len>4794</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>2541</Hsp_hit-from>
<Hsp_hit-to>2532</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>-1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
<Hit>
<Hit_num>12</Hit_num>
<Hit_id>YBL105C_AWRI1631</Hit_id>
<Hit_def>PKC1 ORF Verified [Sc strain AWRI1631] Protein serine/threonine kinase essential for cell wall remodeling during growth; localized to sites of polarized growth and the mother-daughter bud neck; homolog of the alpha, beta, and gamma isoforms of mammalian protein kinase C (PKC)</Hit_def>
<Hit_accession>YBL105C_AWRI1631</Hit_accession>
<Hit_len>3456</Hit_len>
<Hit_hsps>
<Hsp>
<Hsp_num>1</Hsp_num>
<Hsp_bit-score>20.3164</Hsp_bit-score>
<Hsp_score>10</Hsp_score>
<Hsp_evalue>8.16426</Hsp_evalue>
<Hsp_query-from>1</Hsp_query-from>
<Hsp_query-to>10</Hsp_query-to>
<Hsp_hit-from>858</Hsp_hit-from>
<Hsp_hit-to>867</Hsp_hit-to>
<Hsp_query-frame>1</Hsp_query-frame>
<Hsp_hit-frame>1</Hsp_hit-frame>
<Hsp_identity>10</Hsp_identity>
<Hsp_positive>10</Hsp_positive>
<Hsp_gaps>0</Hsp_gaps>
<Hsp_align-len>10</Hsp_align-len>
<Hsp_qseq>GGCTATAATG</Hsp_qseq>
<Hsp_hseq>GGCTATAATG</Hsp_hseq>
<Hsp_midline>||||||||||</Hsp_midline>
</Hsp>
</Hit_hsps>
</Hit>
</Iteration_hits>
<Iteration_stat>
<Statistics>
<Statistics_db-num>4747</Statistics_db-num>
<Statistics_db-len>5368133</Statistics_db-len>
<Statistics_hsp-len>8</Statistics_hsp-len>
<Statistics_eff-space>10660314</Statistics_eff-space>
<Statistics_kappa>0.710602795216363</Statistics_kappa>
<Statistics_lambda>1.37406312246009</Statistics_lambda>
<Statistics_entropy>1.30724660390929</Statistics_entropy>
</Statistics>
</Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>