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DESCRIPTION
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Package: SC3
Type: Package
Title: Single-Cell Consensus Clustering
Version: 1.9.1
Author: Vladimir Kiselev
Maintainer: Vladimir Kiselev <vladimir.yu.kiselev@gmail.com>
Authors@R: c(person("Vladimir", "Kiselev",
email = "vladimir.yu.kiselev@gmail.com",
role=c("cre", "aut")),
person("Andrew", "Yiu",
role=c("ctb")),
person("Tallulah", "Andrews",
role=c("ctb")),
person("Martin", "Hemberg",
role=c("aut")))
Description: A tool for unsupervised clustering and analysis of single cell RNA-Seq data.
License: GPL-3
Imports:
graphics,
stats,
utils,
methods,
e1071,
parallel,
foreach,
doParallel,
doRNG,
shiny,
ggplot2,
pheatmap (>= 1.0.8),
ROCR,
robustbase,
rrcov,
cluster,
WriteXLS,
Rcpp (>= 0.11.1),
SummarizedExperiment,
SingleCellExperiment,
BiocGenerics,
S4Vectors,
Matrix
Depends: R(>= 3.3)
LinkingTo: Rcpp, RcppArmadillo
LazyData: TRUE
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, mclust, scater
VignetteBuilder: knitr
biocViews: SingleCell, Software, Classification, Clustering, DimensionReduction,
SupportVectorMachine, RNASeq, Visualization, Transcriptomics,
DataRepresentation, GUI, DifferentialExpression, Transcription
NeedsCompilation: no
URL: https://github.com/hemberg-lab/SC3
BugReports: https://support.bioconductor.org/t/sc3/