scExtract/pyproject.toml at master · yxwucq/scExtract · GitHub

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[build-system]
requires = ["setuptools>=45", "setuptools-scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"

[project]
name = "scExtract"
version = "0.2.0"
description = "Automatically processing single-cell data from articles"
readme = "README.md"
authors = [
    {name = "Yuxuan George Wu", email = "yxwucq@outlook.com"},
]
keywords = ["single-cell", "data-processing", "bioinformatics"]
dependencies = [
    "scanpy",
    "openai>=1.17.0",
    "defusedxml>=0.7.1",
    "harmonypy>=0.0.9",
    "networkx",
    "oaklib",
    "colorama",
    "leidenalg",
    "louvain",
    "mygene",
    "pyfiglet",
    "pypdf",
    "tabulate",
    "termcolor",
    "tqdm",
    "anthropic>=0.25.1"
]

[project.optional-dependencies]
external = ["singler>=0.4.1",
    "celldex",
    "singlecellexperiment>=0.4.4",
    "celltypist",
]
gpu = ["cupy-cuda12x",
    "pylibraft-cu11",
]

[project.scripts]
scExtract = "scextract.main:main"

[ project.urls ]
Repository = "https://github.com/yxwucq/scExtract.git"

[tool.setuptools.packages.find]
where = ["src"]
include = ["scextract*"]
exclude = ["tests*"]