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fix(clp-mcp-server): Add missing clp-py-utils dependency needed for running unit tests.#1531

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20001020ycx merged 8 commits into
y-scope:mainfrom
20001020ycx:10-31-unit-test-fix
Nov 13, 2025
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fix(clp-mcp-server): Add missing clp-py-utils dependency needed for running unit tests.#1531
20001020ycx merged 8 commits into
y-scope:mainfrom
20001020ycx:10-31-unit-test-fix

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@20001020ycx

@20001020ycx 20001020ycx commented Oct 30, 2025

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Description

clp-mcp-server relies on many constants, data structures, and util functions from clp_py_utils, e.g. clp_py_utils.clp_config import CLPConfig. However, this dependency is only resolved at run time after the entire clp package is built. This led to the problem when locally running uv run --group dev pytest tests/* -vv, the pytest fails because it cannot find the dependencies for imports from clp_py_utils. This PR adds support for this.

Checklist

  • The PR satisfies the contribution guidelines.
  • This is a breaking change and that has been indicated in the PR title, OR this isn't a
    breaking change.
  • Necessary docs have been updated, OR no docs need to be updated.

Validation performed

  1. Being able to successfully run uv run --group dev pytest tests/* -vv locally without clp-package.
  2. Connecting Claude Code Agent to the mcp server in clp-package, and it returns a hello world message. The purpose of this test is to ensure there's no regression.

Summary by CodeRabbit

  • Chores
    • Added a local utility as an editable development dependency and configured local tooling to include it for development.
    • Introduced a new dependency group and reorganized dependency declarations to expand the default development groups for improved local setup and iterative work.

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coderabbitai Bot commented Oct 30, 2025

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Walkthrough

Reworked components/clp-mcp-server/pyproject.toml: introduced a public dependency-group clp containing clp-py-utils, added [tool.uv] with default-groups = ["clp", "dev"], and added [tool.uv.sources] for clp-py-utils pointing to ../clp-py-utils (editable = true).

Changes

Cohort / File(s) Summary
Project configuration
components/clp-mcp-server/pyproject.toml
Added dependency-groups including a public clp group with clp-py-utils; extended dev group (added paginate>=0.5.7, pymongo>=4.15.3); removed top-level dependencies; added [tool.uv] with default-groups = ["clp", "dev"] and [tool.uv.sources] entry for clp-py-utils pointing to ../clp-py-utils (editable = true).

Estimated code review effort

🎯 3 (Moderate) | ⏱️ ~20 minutes

  • Verify clp-py-utils package name matches its package metadata.
  • Confirm local path ../clp-py-utils and editable = true work with local dev tooling and CI (uv integration).
  • Ensure removal of top-level dependencies does not break downstream tooling, lockfiles, or packaging processes.

Pre-merge checks and finishing touches

✅ Passed checks (3 passed)
Check name Status Explanation
Description Check ✅ Passed Check skipped - CodeRabbit’s high-level summary is enabled.
Title check ✅ Passed The title accurately describes the main change: adding the missing clp-py-utils dependency to fix unit test execution in clp-mcp-server.
Docstring Coverage ✅ Passed No functions found in the changed files to evaluate docstring coverage. Skipping docstring coverage check.
✨ Finishing touches
🧪 Generate unit tests (beta)
  • Create PR with unit tests
  • Post copyable unit tests in a comment

📜 Recent review details

Configuration used: CodeRabbit UI

Review profile: ASSERTIVE

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between b5189d9 and 1d13965.

⛔ Files ignored due to path filters (2)
  • components/clp-mcp-server/uv.lock is excluded by !**/*.lock
  • integration-tests/uv.lock is excluded by !**/*.lock
📒 Files selected for processing (1)
  • components/clp-mcp-server/pyproject.toml (2 hunks)
🧰 Additional context used
🧠 Learnings (12)
📓 Common learnings
Learnt from: junhaoliao
Repo: y-scope/clp PR: 1405
File: components/clp-package-utils/pyproject.toml:5-15
Timestamp: 2025-10-13T03:24:35.074Z
Learning: In the y-scope/clp repository, the Python 3.9 to 3.10 version requirement change was intentionally deferred to a separate PR (after PR #1405) to reduce review effort, as decided in an offline discussion between junhaoliao and kirkrodrigues.
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1100
File: integration-tests/tests/fixtures/integration_test_logs.py:54-56
Timestamp: 2025-08-17T16:10:38.722Z
Learning: For PR #1100 (feat(integration-tests): Add CLP package integration tests boilerplate), do not raise cache weakness problems related to the pytest cache implementation in the integration test logs fixtures.
Learnt from: junhaoliao
Repo: y-scope/clp PR: 0
File: :0-0
Timestamp: 2025-10-22T21:02:31.113Z
Learning: Repository y-scope/clp: Maintain deterministic CI/builds for Rust; add a check to verify Cargo.lock is in sync with Cargo.toml without updating dependencies (non-mutating verification in clp-rust-checks workflow).
Learnt from: junhaoliao
Repo: y-scope/clp PR: 1507
File: taskfiles/deps/lock.yaml:66-76
Timestamp: 2025-10-27T04:05:01.560Z
Learning: In the CLP project, the `uv` CLI tool is documented as a prerequisite in docs/src/dev-docs/building-package.md and is not installed via a task dependency like the rust toolchain. UV is expected to be available in the environment rather than being provisioned by the taskfile system.
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1271
File: components/core/tools/scripts/lib_install/centos-stream-9/install-prebuilt-packages.sh:41-43
Timestamp: 2025-08-29T07:31:24.032Z
Learning: In CLP's build tool installation scripts, uv version constraints should use lower bound constraints (uv>=0.8) rather than exact version pinning, following the same philosophy used for other build tools to accommodate platform differences while ensuring minimum required functionality.
Learnt from: junhaoliao
Repo: y-scope/clp PR: 1242
File: taskfile.yaml:545-547
Timestamp: 2025-08-20T05:38:30.720Z
Learning: The python component directories in the y-scope/clp repository are kept very clean and only contain essential files: source code directories, pyproject.toml, poetry.lock, README.md, and the dist/ directory. No cache directories, virtual environments, or other transient files exist in the component directories, so additional exclude patterns beyond "dist/**/*" are unnecessary.
Learnt from: junhaoliao
Repo: y-scope/clp PR: 1575
File: components/clp-py-utils/clp_py_utils/clp_config.py:602-607
Timestamp: 2025-11-10T05:19:56.600Z
Learning: In the y-scope/clp repository, the `ApiServer` class in `components/clp-py-utils/clp_py_utils/clp_config.py` does not need a `transform_for_container()` method because no other containerized service depends on the API server - it's only accessed from the host, so no docker-network communication is expected.
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1100
File: integration-tests/pyproject.toml:11-13
Timestamp: 2025-08-16T10:24:29.316Z
Learning: In the CLP project's integration-tests directory, the integration tests package is not intended to be shipped or distributed - only the tests are leveraged for local testing purposes, so console script entry points should not be included in pyproject.toml.
📚 Learning: 2025-10-27T04:05:01.560Z
Learnt from: junhaoliao
Repo: y-scope/clp PR: 1507
File: taskfiles/deps/lock.yaml:66-76
Timestamp: 2025-10-27T04:05:01.560Z
Learning: In the CLP project, the `uv` CLI tool is documented as a prerequisite in docs/src/dev-docs/building-package.md and is not installed via a task dependency like the rust toolchain. UV is expected to be available in the environment rather than being provisioned by the taskfile system.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-10-22T21:02:31.113Z
Learnt from: junhaoliao
Repo: y-scope/clp PR: 0
File: :0-0
Timestamp: 2025-10-22T21:02:31.113Z
Learning: Repository y-scope/clp: Maintain deterministic CI/builds for Rust; add a check to verify Cargo.lock is in sync with Cargo.toml without updating dependencies (non-mutating verification in clp-rust-checks workflow).

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-08-29T07:31:24.032Z
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1271
File: components/core/tools/scripts/lib_install/centos-stream-9/install-prebuilt-packages.sh:41-43
Timestamp: 2025-08-29T07:31:24.032Z
Learning: In CLP's build tool installation scripts, uv version constraints should use lower bound constraints (uv>=0.8) rather than exact version pinning, following the same philosophy used for other build tools to accommodate platform differences while ensuring minimum required functionality.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-08-16T10:24:29.316Z
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1100
File: integration-tests/pyproject.toml:11-13
Timestamp: 2025-08-16T10:24:29.316Z
Learning: In the CLP project's integration-tests directory, the integration tests package is not intended to be shipped or distributed - only the tests are leveraged for local testing purposes, so console script entry points should not be included in pyproject.toml.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-08-29T07:26:53.532Z
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1271
File: components/core/tools/scripts/lib_install/centos-stream-9/install-prebuilt-packages.sh:27-33
Timestamp: 2025-08-29T07:26:53.532Z
Learning: In CLP's build tool installation scripts, CMake version constraints should accommodate platform differences rather than using exact version pinning. Range constraints like "cmake>=3.23,<3.24" are preferred over exact pinning (cmake==3.23.5) to allow for platform-specific package availability while maintaining required version bounds.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-08-17T16:10:38.722Z
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1100
File: integration-tests/tests/fixtures/integration_test_logs.py:54-56
Timestamp: 2025-08-17T16:10:38.722Z
Learning: For PR #1100 (feat(integration-tests): Add CLP package integration tests boilerplate), do not raise cache weakness problems related to the pytest cache implementation in the integration test logs fixtures.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-07-28T08:33:57.487Z
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1100
File: integration-tests/tests/test_identity_transformation.py:133-137
Timestamp: 2025-07-28T08:33:57.487Z
Learning: In CLP integration tests, the `run_and_assert` utility function should only be used for commands that test CLP package functionality (like clp/clp-s compression/decompression operations). For processing or helper commands (like jq, sort, etc.), direct `subprocess.run` calls should be used instead, as they serve different purposes and don't need the same error handling patterns.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-08-20T05:38:30.720Z
Learnt from: junhaoliao
Repo: y-scope/clp PR: 1242
File: taskfile.yaml:545-547
Timestamp: 2025-08-20T05:38:30.720Z
Learning: The python component directories in the y-scope/clp repository are kept very clean and only contain essential files: source code directories, pyproject.toml, poetry.lock, README.md, and the dist/ directory. No cache directories, virtual environments, or other transient files exist in the component directories, so additional exclude patterns beyond "dist/**/*" are unnecessary.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-10-13T03:24:35.074Z
Learnt from: junhaoliao
Repo: y-scope/clp PR: 1405
File: components/clp-package-utils/pyproject.toml:5-15
Timestamp: 2025-10-13T03:24:35.074Z
Learning: In the y-scope/clp repository, the Python 3.9 to 3.10 version requirement change was intentionally deferred to a separate PR (after PR #1405) to reduce review effort, as decided in an offline discussion between junhaoliao and kirkrodrigues.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-08-08T21:15:10.905Z
Learnt from: haiqi96
Repo: y-scope/clp PR: 1100
File: integration-tests/tests/test_identity_transformation.py:87-95
Timestamp: 2025-08-08T21:15:10.905Z
Learning: In the CLP project's integration tests (Python code), variable names should use "logs" (plural) rather than "log" (singular) when referring to test logs or log-related entities, as this aligns with the naming conventions used throughout the codebase.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
📚 Learning: 2025-08-24T17:10:44.565Z
Learnt from: Bill-hbrhbr
Repo: y-scope/clp PR: 1100
File: taskfiles/lint.yaml:780-781
Timestamp: 2025-08-24T17:10:44.565Z
Learning: The CLP repository is gradually migrating from Black to Ruff for Python formatting. Some modules haven't been set up for Ruff yet, so there's intentional mixed usage of Black and Ruff formatters during this transition period. This should not be flagged as an inconsistency in PR reviews.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (3)
  • GitHub Check: package-image
  • GitHub Check: lint-check (ubuntu-24.04)
  • GitHub Check: lint-check (macos-15)
🔇 Additional comments (2)
components/clp-mcp-server/pyproject.toml (2)

25-27: New dependency group follows established pattern.

The clp dependency group correctly isolates clp-py-utils and aligns with the integration-tests reference pattern suggested in earlier discussions. This structure allows the build tool to manage the dependency separately from other dev dependencies.


87-91: UV tooling configuration verified and approved.

The relative path ../clp-py-utils is correctly configured and resolves properly from the components/clp-mcp-server/ directory. The clp-py-utils package (version 0.6.1-dev) is accessible, and the editable installation specification in [tool.uv.sources] is valid.


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@20001020ycx 20001020ycx changed the title fix uv test fix(clp-mcp-server): Add clp-py-utils in clp-mcp-server dependency for running unit tests. Oct 30, 2025
@20001020ycx 20001020ycx changed the title fix(clp-mcp-server): Add clp-py-utils in clp-mcp-server dependency for running unit tests. fix(clp-mcp-server): Add clp-py-utils as a clp-mcp-server's dependency for running unit tests. Oct 30, 2025
@20001020ycx 20001020ycx marked this pull request as ready for review October 30, 2025 20:11
@20001020ycx 20001020ycx requested a review from a team as a code owner October 30, 2025 20:11

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Actionable comments posted: 1

📜 Review details

Configuration used: CodeRabbit UI

Review profile: ASSERTIVE

Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between f2da1db and 0653261.

⛔ Files ignored due to path filters (1)
  • components/clp-mcp-server/uv.lock is excluded by !**/*.lock
📒 Files selected for processing (1)
  • components/clp-mcp-server/pyproject.toml (1 hunks)
🧰 Additional context used
🧠 Learnings (2)
📓 Common learnings
Learnt from: junhaoliao
PR: y-scope/clp#1405
File: components/clp-package-utils/pyproject.toml:5-15
Timestamp: 2025-10-13T03:24:35.074Z
Learning: In the y-scope/clp repository, the Python 3.9 to 3.10 version requirement change was intentionally deferred to a separate PR (after PR #1405) to reduce review effort, as decided in an offline discussion between junhaoliao and kirkrodrigues.
Learnt from: Bill-hbrhbr
PR: y-scope/clp#1100
File: integration-tests/tests/fixtures/integration_test_logs.py:54-56
Timestamp: 2025-08-17T16:10:38.722Z
Learning: For PR #1100 (feat(integration-tests): Add CLP package integration tests boilerplate), do not raise cache weakness problems related to the pytest cache implementation in the integration test logs fixtures.
Learnt from: junhaoliao
PR: y-scope/clp#0
File: :0-0
Timestamp: 2025-10-22T21:02:31.113Z
Learning: Repository y-scope/clp: Maintain deterministic CI/builds for Rust; add a check to verify Cargo.lock is in sync with Cargo.toml without updating dependencies (non-mutating verification in clp-rust-checks workflow).
Learnt from: junhaoliao
PR: y-scope/clp#1507
File: taskfiles/deps/lock.yaml:66-76
Timestamp: 2025-10-27T04:05:01.560Z
Learning: In the CLP project, the `uv` CLI tool is documented as a prerequisite in docs/src/dev-docs/building-package.md and is not installed via a task dependency like the rust toolchain. UV is expected to be available in the environment rather than being provisioned by the taskfile system.
Learnt from: Bill-hbrhbr
PR: y-scope/clp#1271
File: components/core/tools/scripts/lib_install/centos-stream-9/install-prebuilt-packages.sh:41-43
Timestamp: 2025-08-29T07:31:24.032Z
Learning: In CLP's build tool installation scripts, uv version constraints should use lower bound constraints (uv>=0.8) rather than exact version pinning, following the same philosophy used for other build tools to accommodate platform differences while ensuring minimum required functionality.
📚 Learning: 2025-10-27T04:05:01.560Z
Learnt from: junhaoliao
PR: y-scope/clp#1507
File: taskfiles/deps/lock.yaml:66-76
Timestamp: 2025-10-27T04:05:01.560Z
Learning: In the CLP project, the `uv` CLI tool is documented as a prerequisite in docs/src/dev-docs/building-package.md and is not installed via a task dependency like the rust toolchain. UV is expected to be available in the environment rather than being provisioned by the taskfile system.

Applied to files:

  • components/clp-mcp-server/pyproject.toml
⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (1)
  • GitHub Check: package-image
🔇 Additional comments (2)
components/clp-mcp-server/pyproject.toml (2)

18-19: Verify the local path reference resolves correctly.

The [tool.uv.sources] section correctly configures clp-py-utils as a local editable dependency. However, the relative path ../clp-py-utils assumes a specific directory structure. Ensure this path exists relative to the pyproject.toml location (components/clp-mcp-server/pyproject.toml).

The verification script above will confirm the path resolves correctly. If the path is incorrect, the build or dependency resolution will fail during uv operations.


18-19: LGTM: Local editable mode is appropriate for development.

The use of [tool.uv.sources] with editable = true aligns with the PR objective of enabling unit tests without requiring the full clp-package. This configuration supports the validation workflow mentioned in the PR (uv run --group dev pytest).

"msgpack>=1.1.2",
"paginate>=0.5.7",
"pymongo>=4.15.3",
"clp-py-utils",

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⚠️ Potential issue | 🔴 Critical

🧩 Analysis chain

Add version constraint for clp-py-utils dependency.

The clp-py-utils dependency lacks a version constraint, inconsistent with all other dependencies in this file (e.g., aiomysql>=0.2.0, click>=8.3.0). Even for local editable dependencies, specifying a version constraint improves reproducibility and clarity.

Based on learnings from PR #1271, the repository prefers lower bound version constraints (e.g., >=X.Y.Z).

Please verify the appropriate version constraint for clp-py-utils and update line 15 to include it:

-    "clp-py-utils",
+    "clp-py-utils>=VERSION",

Additionally, run the following script to verify the repository structure and the clp-py-utils directory location:


🏁 Script executed:

#!/bin/bash
# Description: Verify clp-py-utils directory exists and contains a valid pyproject.toml

# Check if clp-py-utils directory exists at the expected path
if [ -d "components/clp-py-utils" ]; then
    echo "✓ clp-py-utils directory found"
    # Verify it contains a pyproject.toml
    if [ -f "components/clp-py-utils/pyproject.toml" ]; then
        echo "✓ pyproject.toml exists in clp-py-utils"
        # Extract version from clp-py-utils pyproject.toml
        grep "^version" components/clp-py-utils/pyproject.toml
    else
        echo "✗ pyproject.toml not found in clp-py-utils"
    fi
else
    echo "✗ clp-py-utils directory not found at components/clp-py-utils"
fi

Length of output: 92


🏁 Script executed:

#!/bin/bash
# View the full pyproject.toml for clp-mcp-server to verify dependency constraints
echo "=== clp-mcp-server/pyproject.toml ==="
cat components/clp-mcp-server/pyproject.toml

echo -e "\n=== Check for similar patterns in other pyproject.toml files ==="
# Find all pyproject.toml files with [tool.uv.sources]
fd -e pyproject.toml -x grep -l "tool.uv.sources" {}

Length of output: 2661


Add version constraint for clp-py-utils dependency to maintain consistency.

The clp-py-utils dependency (line 15) lacks a version constraint, while all other dependencies specify lower bound constraints (e.g., aiomysql>=0.2.0, click>=8.3.0). Even when using editable local sources via [tool.uv.sources], including a version constraint improves reproducibility and aligns with the repository's established pattern (as documented in PR #1271).

Update line 15:

-    "clp-py-utils",
+    "clp-py-utils>=0.5.2",
📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
"clp-py-utils",
"clp-py-utils>=0.5.2",
🤖 Prompt for AI Agents
In components/clp-mcp-server/pyproject.toml around line 15, the clp-py-utils
dependency has no version constraint; update that entry to include a lower-bound
version constraint consistent with other deps (e.g., use the repository's
current package version or the minimum supported version from PR #1271 such as
>=0.1.0) so the dependency line matches the project's pattern and improves
reproducibility.

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for the title, how about:

fix(clp-mcp-server): Add missing `clp-py-utils` dependency needed for running unit tests.

"msgpack>=1.1.2",
"paginate>=0.5.7",
"pymongo>=4.15.3",
"clp-py-utils",

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let's refer to the integration test to set up a clp group:

clp = [
"clp-mcp-server",
"clp-package-utils",
"clp-py-utils",
"job-orchestration",
]

i.e.,

clp = [
    "clp-py-utils",
]

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then below we can add

[tool.uv]
default-groups = ["clp", "dev"]

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for the title, how about:

fix(clp-mcp-server): Add missing `clp-py-utils` dependency needed for running unit tests.

@20001020ycx 20001020ycx changed the title fix(clp-mcp-server): Add clp-py-utils as a clp-mcp-server's dependency for running unit tests. fix(clp-mcp-server): Add missing clp-py-utils dependency needed for running unit tests. Nov 12, 2025
junhaoliao
junhaoliao previously approved these changes Nov 12, 2025
junhaoliao
junhaoliao previously approved these changes Nov 13, 2025

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we discussed offline about the differences between [dependencies] and [dependency-groups]. i can confirm the changes to [dependencies] have been reverted

@20001020ycx 20001020ycx merged commit c1e0001 into y-scope:main Nov 13, 2025
22 checks passed
junhaoliao added a commit to junhaoliao/clp that referenced this pull request May 17, 2026
… running unit tests. (y-scope#1531)

Co-authored-by: Junhao Liao <junhao.liao@yscope.com>
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2 participants