Jit refactor

[willsheffler]

database

• fast cache, no poses
• basic queries
• jit equivalent of Spliceable / SpliceSite logic

Vertex (was Segment)

• build seg data
• new indexing for tree-search

Edge (pre-filter)

• clash, contact, rms in jit
• visualize filtered pairs
• extract segment makeposechains
• is it too slow?

WormFilter aka criteria

• find some extensibility path
• Geom, clash, size
• PoseFilter aka DB filter

search

• auto reallocating accum array aka vector

• pseudocode

• ienter contiguous, add ienter to idxrange array

• tree search for linear arrangements

• topology configuration? Just start with linear? Recombination logic?

[willsheffler]

How to do filter extensibility? List of jit func and opt objects? Signature: (head, tail, opts) head/tail named tuple (ncac, ss, rest_ncac)

What do these get added to? Some kind of protocol object?

Maybe namedtuple with call func field or something?