attempt

Author: vr1087

.github/workflows/conda_release.yml

@@ -17,12 +17,14 @@ jobs:
           fetch-depth: 0
 
       # 2) Install Miniconda and conda-build/anaconda-client
-      - name: Install Miniconda and tools
-        run: |
-          wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
-          bash miniconda.sh -b -p $HOME/miniconda
-          eval "$($HOME/miniconda/bin/conda shell.bash hook)"
-          conda install -y conda-build anaconda-client
+      - name: create environment with conda
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          channels: conda-forge,defaults
+          auto-activate-base: false
+          auto-update-conda: true
+          activate-environment: build-env
+          environment-file: conda-recipe/build-env.yaml
 
       # 3) Determine VERSION (strip the leading “v”) and compute SHA256
       - name: Set version and SHA256
@@ -76,7 +78,6 @@ jobs:
       # 5) Build the conda package
       - name: Build conda package
         run: |
-          eval "$($HOME/miniconda/bin/conda shell.bash hook)"
           cd conda-recipe
           conda-build . --output-folder ../conda-build-artifacts
 
@@ -85,6 +86,5 @@ jobs:
         env:
           ANACONDA_TOKEN: ${{ secrets.ANACONDA_TOKEN }}
         run: |
-          eval "$($HOME/miniconda/bin/conda shell.bash hook)"
-          PACKAGE=$(ls conda-build-artifacts/linux-64/aligncount-demo-${{ steps.vars.outputs.VERSION }}-*.tar.bz2)
+          PACKAGE=$(ls conda-build-artifacts/linux-64/${GITHUB_REPOSITORY##*/}-${{ steps.vars.outputs.VERSION }}-*.tar.bz2)
           anaconda -t $ANACONDA_TOKEN upload $PACKAGE --user $ANACONDA_USER --label main --force

conda-recipe/build-env.yaml

@@ -0,0 +1,9 @@
+name: build-env
+channels:
+  - conda-forge
+  - bioconda
+  - defaults
+dependencies:
+  - scikit-build
+  - conda-build
+  - anaconda-client

conda-recipe/meta.yaml

@@ -31,8 +31,10 @@ requirements:
     - scikit-build
   host:
     - python >=3.10
+    - scikit-build
   run:
     - python >=3.10
+    - scikit-build
 
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