wrapper rename, doc edits, dockerfile fix

Author: vr1087

Dockerfile

@@ -32,10 +32,6 @@ RUN cd cpp && mkdir build && cd build \
 # 4) Build a wheel into /wheelhouse
 RUN pip3 wheel . -w /wheelhouse
 
-# (At this point, /wheelhouse/ contains something like:
-#  aligncount_demo-0.1.0-py3-none-any.whl )
-
-
 # ----------------------------------------------------------------------------
 # Stage 2: Final runtime image
 # ----------------------------------------------------------------------------
@@ -45,6 +41,10 @@ FROM ubuntu:22.04
 RUN apt-get update && apt-get install -y \
     python3 \
     python3-pip \
+    libcurl4 \
+    liblzma5 \
+    libbz2-1.0 \
+    zlib1g \
  && rm -rf /var/lib/apt/lists/*
 
 WORKDIR /app

README.md

@@ -21,8 +21,8 @@ Template Repo Combines:
   - Replace instances of ALIGNCOUNT_VERSION with `[YOUR_PROJECT_NAME]_VERSION`
   - Set the name of the C++ executable (e.g. aligncount_cpp) to your liking in `cpp/standalone/CMakeLists.txt`
 - Set the expected name of the C++ executable in the `cpp_standalone.yml` workflow.
-- Set the expected name of the C++ executable and python wrapper in `DockerFile`.
 - Set the name for your published docker image in `docker_release.yml`
+- Set the name for your Python Wrapper entry point script in `setup.cfg`
 - Replace the source files with your own
 - Set GitHub action secrets for:
   - ANACONDA_TOKEN

setup.cfg

@@ -9,4 +9,4 @@ python_requires = >=3.9,<3.14
 
 [options.entry_points]
 console_scripts =
-    aligncount_wrapper = cli.entrypoint:main
+    aligncount = cli.entrypoint:main