fix

Author: vr1087

cli/setup.py

@@ -2,7 +2,7 @@
 
 import os
 import configparser
-from setuptools import setup
+from setuptools import setup, find_packages
 
 # 1) Load the same shared INI file from the parent directory
 cfg = configparser.ConfigParser()
@@ -11,12 +11,20 @@
 # 2) Extract metadata
 metadata = cfg["metadata"]
 options = cfg["options"]
+entry_points = {
+    "console_scripts": [
+        line.strip()
+        for line in cfg["options.entry_points"]["console_scripts"].splitlines()
+        if line.strip()
+    ]
+}
 
 # 3) Call setuptools.setup() with that metadata
 setup(
     name=metadata["name"],
     version=metadata["version"],
     description=metadata["description"],
     python_requires=options["python_requires"],
-    entry_points={"console_scripts":["aligncount = entrypoint:main"]},
+    packages=find_packages(where=os.path.join(os.path.dirname(__file__), "..")),
+    entry_points=entry_points,
 )

conda-recipe/meta.yaml

@@ -88,7 +88,7 @@ outputs:
       # pure-Python wrapper) into the test environment, so the
       # test can import it.
       source_files:
-        - ../tests/python/test_cli.py
+        - ../../tests/python/*.py
 
       # Invoke pytest on the copied file(s).
       commands: