simMSnSet/DESCRIPTION at master · vladpetyuk/simMSnSet · GitHub

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Package: simMSnSet
Type: Package
Title: Simulation of MSnSet Objects
Version: 0.0.2
Date: 2015-08-31
Author: Vlad Petyuk
Maintainer: Vlad Petyuk <petyuk@gmail.com>
Description: Utility to simulate quantitative proteomics data.
             Note, the simulations will be as realistic - as realistic the
             input parameters. Inference of parameters for a number of
             distributions describing quantitative proteomics data is
             in the plans. The set of current controling distributions
             allows to control for 1) sample bias (e.g. due to pipetting
             error), 2) missing values, 3) number of peptides per protein,
             4) outlying samples, 5) outlying peptide identifications,
             6) outlying measurements and 7) sample group effects.
License: Artistic-2.0
VignetteBuilder: knitr
biocViews: Proteomics, MassSpectrometry
Suggests:
    knitr
Imports:
    reshape2,
    ggplot2,
    MSnbase
Collate:
    'AllClasses.R'
    'AllGenerics.R'
    'as-methods.R'
    'proteins.R'
    'phenotypes.R'
    'experiment.R'
    'image-methods.R'
    'plot-methods.R'
    'show-methods.R'
    'simulate-methods.R'