diff --git a/_data/citations.yaml b/_data/citations.yaml
index 2895b19d..fc0a47a2 100644
--- a/_data/citations.yaml
+++ b/_data/citations.yaml
@@ -1,710 +1,697 @@
# DO NOT EDIT, GENERATED AUTOMATICALLY
- id: doi:10.1111/jvim.70133
- title: "The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization"
+ title: 'The Vertebrate Breed Ontology: Toward Effective Breed Data Standardization'
authors:
- - Kathleen R. Mullen
- - Imke Tammen
- - Nicolas A. Matentzoglu
- - Marius Mather
- - James P. Balhoff
- - Elizabeth Esdaile
- - Gregoire Leroy
- - Carissa A. Park
- - Halie M. Rando
- - Nadia T. Saklou
- - Tracy L. Webb
- - Nicole A. Vasilevsky
- - Christopher J. Mungall
- - Melissa A. Haendel
- - Frank W. Nicholas
- - Sabrina Toro
+ - Kathleen R. Mullen
+ - Imke Tammen
+ - Nicolas A. Matentzoglu
+ - Marius Mather
+ - James P. Balhoff
+ - Elizabeth Esdaile
+ - Gregoire Leroy
+ - Carissa A. Park
+ - Halie M. Rando
+ - Nadia T. Saklou
+ - Tracy L. Webb
+ - Nicole A. Vasilevsky
+ - Christopher J. Mungall
+ - Melissa A. Haendel
+ - Frank W. Nicholas
+ - Sabrina Toro
publisher: Journal of Veterinary Internal Medicine
- date: "2025-07-01"
+ date: '2025-07-01'
link: https://doi.org/hbwvfw
type: journal paper
- image: images/m_jvim70133-fig-0003.jpeg
tags:
- - ontology
- - animals
- - domestication
+ - ontology
+ - animals
+ - domestication
plugin: sources.py
file: sources.yaml
- id: doi:10.2460/ajvr.24.10.0315
- title:
- Standardizing canine breed data in veterinary records is challenging, but
+ title: Standardizing canine breed data in veterinary records is challenging, but
computer vision offers an alternative perspective on breed assignment
authors:
- - Glenvelis Perez
- - Yixuan He
- - Zihan Lyu
- - Yilin Chen
- - Nicholas R. Howe
- - Halie M. Rando
+ - Glenvelis Perez
+ - Yixuan He
+ - Zihan Lyu
+ - Yilin Chen
+ - Nicholas R. Howe
+ - Halie M. Rando
publisher: American Journal of Veterinary Research
- date: "2025-03-01"
+ date: '2025-03-01'
link: https://doi.org/g85s7s
type: journal paper
- image: images/full-ajvr.24.10.0315.figure1.jpg
tags:
- - genetics
- - dogs
- - machine learning
+ - genetics
+ - dogs
+ - machine learning
plugin: sources.py
file: sources.yaml
- id: doi:10.1093/jhered/esae022
- title:
- "Missing history of a modern domesticate: Historical demographics and genetic
- diversity in farm-bred red fox populations"
+ title: 'Missing history of a modern domesticate: Historical demographics and genetic
+ diversity in farm-bred red fox populations'
authors:
- - Halie M Rando
- - Emmarie P Alexander
- - Sophie Preckler-Quisquater
- - Cate B Quinn
- - Jeremy T Stutchman
- - Jennifer L Johnson
- - Estelle R Bastounes
- - Beata Horecka
- - Kristina L Black
- - Michael P Robson
- - Darya V Shepeleva
- - Yury E Herbeck
- - Anastasiya V Kharlamova
- - Lyudmila N Trut
- - Jonathan N Pauli
- - Benjamin N Sacks
- - Anna V Kukekova
+ - Halie M Rando
+ - Emmarie P Alexander
+ - Sophie Preckler-Quisquater
+ - Cate B Quinn
+ - Jeremy T Stutchman
+ - Jennifer L Johnson
+ - Estelle R Bastounes
+ - Beata Horecka
+ - Kristina L Black
+ - Michael P Robson
+ - Darya V Shepeleva
+ - Yury E Herbeck
+ - Anastasiya V Kharlamova
+ - Lyudmila N Trut
+ - Jonathan N Pauli
+ - Benjamin N Sacks
+ - Anna V Kukekova
publisher: Journal of Heredity
- date: "2024-04-16"
+ date: '2024-04-16'
link: https://doi.org/gtq55b
type: journal paper
image: images/jhered_2024_red_fox_map.jpeg
tags:
- - domestication
- - foxes
- - wildlife
+ - domestication
+ - foxes
+ - wildlife
plugin: sources.py
file: sources.yaml
- id: doi:10.2460/javma.23.07.0372
- title:
- Many direct-to-consumer canine genetic tests can identify the breed of purebred
+ title: Many direct-to-consumer canine genetic tests can identify the breed of purebred
dogs
authors:
- - Halie M. Rando
- - Kiley Graim
- - Greg Hampikian
- - Casey S. Greene
+ - Halie M. Rando
+ - Kiley Graim
+ - Greg Hampikian
+ - Casey S. Greene
publisher: Journal of the American Veterinary Medical Association
- date: "2024-05-01"
+ date: '2024-05-01'
link: https://doi.org/gtn72p
type: journal paper
image: https://user-images.githubusercontent.com/8975841/250271905-4eed44ba-528a-4a61-a4ec-fa90d51e61f9.jpg
tags:
- - reproducibility
- - genetics
- - dogs
+ - reproducibility
+ - genetics
+ - dogs
plugin: sources.py
file: sources.yaml
- id: url:https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_1882.pdf
title: Classifying animal breeds with the vertebrate breed ontology (VBO)
authors:
- - Sabrina Toro
- - Nicolas Matentzoglu
- - Kathleen R. Mullen
- - Nicole Vasilevsky
- - Halie M. Rando
- - Melissa Haendel
- - Christopher J. Mungall
- - Zhi-Liang Hu
- - Gregoire Leroy
- - Imke Tammen
- - Frank W. Nicholas
+ - Sabrina Toro
+ - Nicolas Matentzoglu
+ - Kathleen R. Mullen
+ - Nicole Vasilevsky
+ - Halie M. Rando
+ - Melissa Haendel
+ - Christopher J. Mungall
+ - Zhi-Liang Hu
+ - Gregoire Leroy
+ - Imke Tammen
+ - Frank W. Nicholas
publisher: Proceedings of the International Conference on Biomedical Ontology
- date: "2022-09-25"
+ date: '2022-09-25'
link: https://icbo-conference.github.io/icbo2022/papers/ICBO-2022_paper_1882.pdf
type: conference paper
image: https://user-images.githubusercontent.com/8975841/260512613-910f7bcd-2648-48db-8874-d37bca58c8f1.png
tags:
- - ontology
- - animals
- - domestication
+ - ontology
+ - animals
+ - domestication
plugin: sources.py
file: sources.yaml
- id: doi:10.1016/j.ebiom.2021.103722
- title: "Characterizing Long COVID: Deep Phenotype of a Complex Condition"
+ title: 'Characterizing Long COVID: Deep Phenotype of a Complex Condition'
authors:
- - Rachel R Deer
- - Madeline A Rock
- - Nicole Vasilevsky
- - Leigh Carmody
- - Halie Rando
- - Alfred J Anzalone
- - Marc D Basson
- - Tellen D Bennett
- - Timothy Bergquist
- - Eilis A Boudreau
- - Carolyn T Bramante
- - James Brian Byrd
- - Tiffany J Callahan
- - Lauren E Chan
- - Haitao Chu
- - Christopher G Chute
- - Ben D Coleman
- - Hannah E Davis
- - Joel Gagnier
- - Casey S Greene
- - William B Hillegass
- - Ramakanth Kavuluru
- - Wesley D Kimble
- - Farrukh M Koraishy
- - "Sebastian K\xF6hler"
- - Chen Liang
- - Feifan Liu
- - Hongfang Liu
- - Vithal Madhira
- - Charisse R Madlock-Brown
- - Nicolas Matentzoglu
- - Diego R Mazzotti
- - Julie A McMurry
- - Douglas S McNair
- - Richard A Moffitt
- - Teshamae S Monteith
- - Ann M Parker
- - Mallory A Perry
- - Emily Pfaff
- - Justin T Reese
- - Joel Saltz
- - Robert A Schuff
- - Anthony E Solomonides
- - Julian Solway
- - Heidi Spratt
- - Gary S Stein
- - Anupam A Sule
- - Umit Topaloglu
- - George D. Vavougios
- - Liwei Wang
- - Melissa A Haendel
- - Peter N Robinson
+ - Rachel R Deer
+ - Madeline A Rock
+ - Nicole Vasilevsky
+ - Leigh Carmody
+ - Halie Rando
+ - Alfred J Anzalone
+ - Marc D Basson
+ - Tellen D Bennett
+ - Timothy Bergquist
+ - Eilis A Boudreau
+ - Carolyn T Bramante
+ - James Brian Byrd
+ - Tiffany J Callahan
+ - Lauren E Chan
+ - Haitao Chu
+ - Christopher G Chute
+ - Ben D Coleman
+ - Hannah E Davis
+ - Joel Gagnier
+ - Casey S Greene
+ - William B Hillegass
+ - Ramakanth Kavuluru
+ - Wesley D Kimble
+ - Farrukh M Koraishy
+ - "Sebastian K\xF6hler"
+ - Chen Liang
+ - Feifan Liu
+ - Hongfang Liu
+ - Vithal Madhira
+ - Charisse R Madlock-Brown
+ - Nicolas Matentzoglu
+ - Diego R Mazzotti
+ - Julie A McMurry
+ - Douglas S McNair
+ - Richard A Moffitt
+ - Teshamae S Monteith
+ - Ann M Parker
+ - Mallory A Perry
+ - Emily Pfaff
+ - Justin T Reese
+ - Joel Saltz
+ - Robert A Schuff
+ - Anthony E Solomonides
+ - Julian Solway
+ - Heidi Spratt
+ - Gary S Stein
+ - Anupam A Sule
+ - Umit Topaloglu
+ - George D. Vavougios
+ - Liwei Wang
+ - Melissa A Haendel
+ - Peter N Robinson
publisher: eBioMedicine
- date: "2021-12-01"
+ date: '2021-12-01'
link: https://doi.org/gnmkm7
type: journal paper
image: https://www.medrxiv.org/content/medrxiv/early/2021/06/29/2021.06.23.21259416/F1.large.jpg?width=800&height=600&carousel=1
tags:
- - ontology
- - disease
- - humans
+ - ontology
+ - disease
+ - humans
plugin: sources.py
file: sources.yaml
- id: url:http://ceur-ws.org/Vol-2976/paper-2.pdf
title: An Open-Publishing Response to the COVID-19 Infodemic
authors:
- - Halie M. Rando
- - Simina M. Boca
- - Lucy D'Agostino McGowan
- - Daniel S. Himmelstein
- - Michael P. Robson
- - Vincent Rubinetti
- - Ryan Velazquez
- - Casey S. Greene
- - Anthony Gitter
+ - Halie M. Rando
+ - Simina M. Boca
+ - Lucy D'Agostino McGowan
+ - Daniel S. Himmelstein
+ - Michael P. Robson
+ - Vincent Rubinetti
+ - Ryan Velazquez
+ - Casey S. Greene
+ - Anthony Gitter
publisher: Digital Infrastructures for Scholarly Content Objects 2021
- date: "2021-09-30"
+ date: '2021-09-30'
link: http://ceur-ws.org/Vol-2976/paper-2.pdf
type: conference paper
image: https://user-images.githubusercontent.com/8975841/137757668-cf24b018-5539-4969-965f-305fee56b2d3.png
tags:
- - manubot
- - reproducibility
- - documents
+ - manubot
+ - reproducibility
+ - documents
plugin: sources.py
file: sources.yaml
- id: doi:10.1128/mSystems.00122-21
- title:
- Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention
+ title: Dietary Supplements and Nutraceuticals under Investigation for COVID-19 Prevention
and Treatment
authors:
- - Ronan Lordan
- - Halie M. Rando
- - Casey S. Greene
+ - Ronan Lordan
+ - Halie M. Rando
+ - Casey S. Greene
publisher: mSystems
- date: "2021-06-29"
+ date: '2021-06-29'
link: https://doi.org/gj9qvs
image: https://greenelab.github.io/covid19-review/images/N000-overview.png
tags:
- - manubot
- - COVID-19
+ - manubot
+ - COVID-19
plugin: sources.py
file: sources.yaml
- id: doi:10.1128/msystems.00095-21
- title:
- Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis
+ title: Pathogenesis, Symptomatology, and Transmission of SARS-CoV-2 through Analysis
of Viral Genomics and Structure
authors:
- - Halie M. Rando
- - Adam L. MacLean
- - Alexandra J. Lee
- - Ronan Lordan
- - Sandipan Ray
- - Vikas Bansal
- - Ashwin N. Skelly
- - Elizabeth Sell
- - John J. Dziak
- - Lamonica Shinholster
- - "Lucy D\u2019Agostino McGowan"
- - Marouen Ben Guebila
- - Nils Wellhausen
- - Sergey Knyazev
- - Simina M. Boca
- - Stephen Capone
- - Yanjun Qi
- - YoSon Park
- - David Mai
- - Yuchen Sun
- - Joel D. Boerckel
- - Christian Brueffer
- - James Brian Byrd
- - Jeremy P. Kamil
- - Jinhui Wang
- - Ryan Velazquez
- - Gregory L. Szeto
- - John P. Barton
- - Rishi Raj Goel
- - Serghei Mangul
- - Tiago Lubiana
- - Anthony Gitter
- - Casey S. Greene
+ - Halie M. Rando
+ - Adam L. MacLean
+ - Alexandra J. Lee
+ - Ronan Lordan
+ - Sandipan Ray
+ - Vikas Bansal
+ - Ashwin N. Skelly
+ - Elizabeth Sell
+ - John J. Dziak
+ - Lamonica Shinholster
+ - "Lucy D\u2019Agostino McGowan"
+ - Marouen Ben Guebila
+ - Nils Wellhausen
+ - Sergey Knyazev
+ - Simina M. Boca
+ - Stephen Capone
+ - Yanjun Qi
+ - YoSon Park
+ - David Mai
+ - Yuchen Sun
+ - Joel D. Boerckel
+ - Christian Brueffer
+ - James Brian Byrd
+ - Jeremy P. Kamil
+ - Jinhui Wang
+ - Ryan Velazquez
+ - Gregory L. Szeto
+ - John P. Barton
+ - Rishi Raj Goel
+ - Serghei Mangul
+ - Tiago Lubiana
+ - Anthony Gitter
+ - Casey S. Greene
publisher: mSystems
- date: "2021-10-26"
+ date: '2021-10-26'
link: https://doi.org/gm8k9b
image: https://greenelab.github.io/covid19-review/images/N000-overview.png
tags:
- - manubot
- - COVID-19
+ - manubot
+ - COVID-19
plugin: sources.py
file: sources.yaml
- id: doi:10.1128/mSystems.00233-21
title: Identification and Development of Therapeutics for COVID-19
authors:
- - Halie M. Rando
- - Nils Wellhausen
- - Soumita Ghosh
- - Alexandra J. Lee
- - Anna Ada Dattoli
- - Fengling Hu
- - James Brian Byrd
- - Diane N. Rafizadeh
- - Ronan Lordan
- - Yanjun Qi
- - Yuchen Sun
- - Christian Brueffer
- - Jeffrey M. Field
- - Marouen Ben Guebila
- - Nafisa M. Jadavji
- - Ashwin N. Skelly
- - Bharath Ramsundar
- - Jinhui Wang
- - Rishi Raj Goel
- - YoSon Park
- - Simina M. Boca
- - Anthony Gitter
- - Casey S. Greene
+ - Halie M. Rando
+ - Nils Wellhausen
+ - Soumita Ghosh
+ - Alexandra J. Lee
+ - Anna Ada Dattoli
+ - Fengling Hu
+ - James Brian Byrd
+ - Diane N. Rafizadeh
+ - Ronan Lordan
+ - Yanjun Qi
+ - Yuchen Sun
+ - Christian Brueffer
+ - Jeffrey M. Field
+ - Marouen Ben Guebila
+ - Nafisa M. Jadavji
+ - Ashwin N. Skelly
+ - Bharath Ramsundar
+ - Jinhui Wang
+ - Rishi Raj Goel
+ - YoSon Park
+ - Simina M. Boca
+ - Anthony Gitter
+ - Casey S. Greene
publisher: mSystems
- date: "2021-12-21"
+ date: '2021-12-21'
link: https://doi.org/gnbhqq
image: https://greenelab.github.io/covid19-review/images/N000-overview.png
tags:
- - manubot
- - COVID-19
+ - manubot
+ - COVID-19
plugin: sources.py
file: sources.yaml
- id: doi:10.48550/ARXIV.2204.12598
title: Molecular and Serologic Diagnostic Technologies for SARS-CoV-2
authors:
- - Halie M. Rando
- - Christian Brueffer
- - Ronan Lordan
- - Anna Ada Dattoli
- - David Manheim
- - Jesse G. Meyer
- - Ariel I. Mundo
- - Dimitri Perrin
- - David Mai
- - Nils Wellhausen
- - COVID-19 Review Consortium
- - Anthony Gitter
- - Casey S. Greene
+ - Halie M. Rando
+ - Christian Brueffer
+ - Ronan Lordan
+ - Anna Ada Dattoli
+ - David Manheim
+ - Jesse G. Meyer
+ - Ariel I. Mundo
+ - Dimitri Perrin
+ - David Mai
+ - Nils Wellhausen
+ - COVID-19 Review Consortium
+ - Anthony Gitter
+ - Casey S. Greene
publisher: arXiv
- date: "2022-01-01"
+ date: '2022-01-01'
link: https://doi.org/gp4ftc
image: https://greenelab.github.io/covid19-review/images/N000-overview.png
tags:
- - manubot
- - COVID-19
+ - manubot
+ - COVID-19
plugin: sources.py
file: sources.yaml
- id: doi:10.1128/msystems.00927-22
title: Application of Traditional Vaccine Development Strategies to SARS-CoV-2
authors:
- - Halie M. Rando
- - Ronan Lordan
- - Alexandra J. Lee
- - Amruta Naik
- - Nils Wellhausen
- - Elizabeth Sell
- - Likhitha Kolla
- - Anthony Gitter
- - Casey S. Greene
- - Vikas Bansal
- - John P. Barton
- - Simina M. Boca
- - Joel D. Boerckel
- - Christian Brueffer
- - James Brian Byrd
- - Stephen Capone
- - Shikta Das
- - Anna Ada Dattoli
- - John J. Dziak
- - Jeffrey M. Field
- - Soumita Ghosh
- - Anthony Gitter
- - Rishi Raj Goel
- - Casey S. Greene
- - Marouen Ben Guebila
- - Daniel S. Himmelstein
- - Fengling Hu
- - Nafisa M. Jadavji
- - Jeremy P. Kamil
- - Sergey Knyazev
- - Likhitha Kolla
- - Alexandra J. Lee
- - Ronan Lordan
- - Tiago Lubiana
- - Temitayo Lukan
- - Adam L. MacLean
- - David Mai
- - Serghei Mangul
- - David Manheim
- - "Lucy D\u2019Agostino McGowan"
- - Jesse G. Meyer
- - Ariel I. Mundo
- - Amruta Naik
- - YoSon Park
- - Dimitri Perrin
- - Yanjun Qi
- - Diane N. Rafizadeh
- - Bharath Ramsundar
- - Halie M. Rando
- - Sandipan Ray
- - Michael P. Robson
- - Vincent Rubinetti
- - Elizabeth Sell
- - Lamonica Shinholster
- - Ashwin N. Skelly
- - Yuchen Sun
- - Yusha Sun
- - Gregory L. Szeto
- - Ryan Velazquez
- - Jinhui Wang
- - Nils Wellhausen
+ - Halie M. Rando
+ - Ronan Lordan
+ - Alexandra J. Lee
+ - Amruta Naik
+ - Nils Wellhausen
+ - Elizabeth Sell
+ - Likhitha Kolla
+ - Anthony Gitter
+ - Casey S. Greene
+ - Vikas Bansal
+ - John P. Barton
+ - Simina M. Boca
+ - Joel D. Boerckel
+ - Christian Brueffer
+ - James Brian Byrd
+ - Stephen Capone
+ - Shikta Das
+ - Anna Ada Dattoli
+ - John J. Dziak
+ - Jeffrey M. Field
+ - Soumita Ghosh
+ - Anthony Gitter
+ - Rishi Raj Goel
+ - Casey S. Greene
+ - Marouen Ben Guebila
+ - Daniel S. Himmelstein
+ - Fengling Hu
+ - Nafisa M. Jadavji
+ - Jeremy P. Kamil
+ - Sergey Knyazev
+ - Likhitha Kolla
+ - Alexandra J. Lee
+ - Ronan Lordan
+ - Tiago Lubiana
+ - Temitayo Lukan
+ - Adam L. MacLean
+ - David Mai
+ - Serghei Mangul
+ - David Manheim
+ - "Lucy D\u2019Agostino McGowan"
+ - Jesse G. Meyer
+ - Ariel I. Mundo
+ - Amruta Naik
+ - YoSon Park
+ - Dimitri Perrin
+ - Yanjun Qi
+ - Diane N. Rafizadeh
+ - Bharath Ramsundar
+ - Halie M. Rando
+ - Sandipan Ray
+ - Michael P. Robson
+ - Vincent Rubinetti
+ - Elizabeth Sell
+ - Lamonica Shinholster
+ - Ashwin N. Skelly
+ - Yuchen Sun
+ - Yusha Sun
+ - Gregory L. Szeto
+ - Ryan Velazquez
+ - Jinhui Wang
+ - Nils Wellhausen
publisher: mSystems
- date: "2023-04-27"
+ date: '2023-04-27'
link: https://doi.org/grv3d9
image: https://greenelab.github.io/covid19-review/images/N000-overview.png
tags:
- - manubot
- - COVID-19
+ - manubot
+ - COVID-19
plugin: sources.py
file: sources.yaml
- id: doi:10.1128/msystems.00928-22
title: The Coming of Age of Nucleic Acid Vaccines during COVID-19
authors:
- - Halie M. Rando
- - Ronan Lordan
- - Likhitha Kolla
- - Elizabeth Sell
- - Alexandra J. Lee
- - Nils Wellhausen
- - Amruta Naik
- - Jeremy P. Kamil
- - Anthony Gitter
- - Casey S. Greene
- - John P. Barton
- - Simina M. Boca
- - Joel D. Boerckel
- - Christian Brueffer
- - James Brian Byrd
- - Stephen Capone
- - Shikta Capone
- - Anna Ada Dattoli
- - John J. Dziak
- - Jeffrey M. Field
- - Soumita Ghosh
- - Anthony Gitter
- - Rishi Raj Goel
- - Casey S. Greene
- - Marouen Ben Guebila
- - Daniel S. Himmelstein
- - Fengling Hu
- - Nafisa M. Jadavji
- - Jeremy P. Kamil
- - Sergey Knyazev
- - Likhitha Kolla
- - Alexandra J. Lee
- - Ronan Lordan
- - Tiago Lubiana
- - Temitayo Lukan
- - Adam L. MacLean
- - David Mai
- - Serghei Mangul
- - David Manheim
- - "Lucy D\u2019Agostino McGowan"
- - Jesse G. Meyer
- - Ariel I. Mundo
- - Amruta Naik
- - YoSon Park
- - Dimitri Perrin
- - Yanjun Qi
- - Diane N. Rafizadeh
- - Bharath Ramsundar
- - Halie M. Rando
- - Sandipan Ray
- - Michael P. Robson
- - Vincent Rubinetti
- - Elizabeth Sell
- - Lamonica Shinholster
- - Ashwin N. Skelly
- - Yuchen Sun
- - Yusha Sun
- - Gregory L. Szeto
- - Ryan Velazquez
- - Jinhui Wang
- - Nils Wellhausen
+ - Halie M. Rando
+ - Ronan Lordan
+ - Likhitha Kolla
+ - Elizabeth Sell
+ - Alexandra J. Lee
+ - Nils Wellhausen
+ - Amruta Naik
+ - Jeremy P. Kamil
+ - Anthony Gitter
+ - Casey S. Greene
+ - John P. Barton
+ - Simina M. Boca
+ - Joel D. Boerckel
+ - Christian Brueffer
+ - James Brian Byrd
+ - Stephen Capone
+ - Shikta Capone
+ - Anna Ada Dattoli
+ - John J. Dziak
+ - Jeffrey M. Field
+ - Soumita Ghosh
+ - Anthony Gitter
+ - Rishi Raj Goel
+ - Casey S. Greene
+ - Marouen Ben Guebila
+ - Daniel S. Himmelstein
+ - Fengling Hu
+ - Nafisa M. Jadavji
+ - Jeremy P. Kamil
+ - Sergey Knyazev
+ - Likhitha Kolla
+ - Alexandra J. Lee
+ - Ronan Lordan
+ - Tiago Lubiana
+ - Temitayo Lukan
+ - Adam L. MacLean
+ - David Mai
+ - Serghei Mangul
+ - David Manheim
+ - "Lucy D\u2019Agostino McGowan"
+ - Jesse G. Meyer
+ - Ariel I. Mundo
+ - Amruta Naik
+ - YoSon Park
+ - Dimitri Perrin
+ - Yanjun Qi
+ - Diane N. Rafizadeh
+ - Bharath Ramsundar
+ - Halie M. Rando
+ - Sandipan Ray
+ - Michael P. Robson
+ - Vincent Rubinetti
+ - Elizabeth Sell
+ - Lamonica Shinholster
+ - Ashwin N. Skelly
+ - Yuchen Sun
+ - Yusha Sun
+ - Gregory L. Szeto
+ - Ryan Velazquez
+ - Jinhui Wang
+ - Nils Wellhausen
publisher: mSystems
- date: "2023-04-27"
+ date: '2023-04-27'
link: https://doi.org/grv5vq
image: https://greenelab.github.io/covid19-review/images/N000-overview.png
tags:
- - manubot
- - COVID-19
+ - manubot
+ - COVID-19
plugin: sources.py
file: sources.yaml
- id: doi:10.1101/2021.03.20.21253896
- title:
- "Challenges in defining Long COVID: Striking differences across literature,
- Electronic Health Records, and patient-reported information"
+ title: 'Challenges in defining Long COVID: Striking differences across literature,
+ Electronic Health Records, and patient-reported information'
authors:
- - Halie M. Rando
- - Tellen D. Bennett
- - James Brian Byrd
- - Carolyn Bramante
- - Tiffany J. Callahan
- - Christopher G. Chute
- - Hannah E. Davis
- - Rachel Deer
- - Joel Gagnier
- - Farrukh M Koraishy
- - Feifan Liu
- - Julie A. McMurry
- - Richard A. Moffitt
- - Emily R. Pfaff
- - Justin T. Reese
- - Rose Relevo
- - Peter N. Robinson
- - Joel H. Saltz
- - Anthony Solomonides
- - Anupam Sule
- - Umit Topaloglu
- - Melissa A. Haendel
+ - Halie M. Rando
+ - Tellen D. Bennett
+ - James Brian Byrd
+ - Carolyn Bramante
+ - Tiffany J. Callahan
+ - Christopher G. Chute
+ - Hannah E. Davis
+ - Rachel Deer
+ - Joel Gagnier
+ - Farrukh M Koraishy
+ - Feifan Liu
+ - Julie A. McMurry
+ - Richard A. Moffitt
+ - Emily R. Pfaff
+ - Justin T. Reese
+ - Rose Relevo
+ - Peter N. Robinson
+ - Joel H. Saltz
+ - Anthony Solomonides
+ - Anupam Sule
+ - Umit Topaloglu
+ - Melissa A. Haendel
publisher: openRxiv
- date: "2021-03-26"
+ date: '2021-03-26'
link: https://doi.org/gjk3ng
image: https://user-images.githubusercontent.com/8975841/112666874-013a3400-8e33-11eb-9be9-5c74f3e397ea.png
type: preprint
tags:
- - ontology
- - disease
- - humans
+ - ontology
+ - disease
+ - humans
plugin: sources.py
file: sources.yaml
- id: doi:10.3390/genes10060409
title: The Red Fox Y-Chromosome in Comparative Context
authors:
- - Halie M. Rando
- - William H. Wadlington
- - Jennifer L. Johnson
- - Jeremy T. Stutchman
- - Lyudmila N. Trut
- - "Marta Farr\xE9"
- - Anna V. Kukekova
+ - Halie M. Rando
+ - William H. Wadlington
+ - Jennifer L. Johnson
+ - Jeremy T. Stutchman
+ - Lyudmila N. Trut
+ - "Marta Farr\xE9"
+ - Anna V. Kukekova
publisher: Genes
- date: "2019-05-28"
+ date: '2019-05-28'
link: https://doi.org/gk67ng
image: images/thumbnails/Red_fox_ychromosome_genes10060409.png
tags:
- - foxes
- - genomes
- - machine learning
+ - foxes
+ - genomes
+ - machine learning
plugin: sources.py
file: sources.yaml
- id: doi:10.3390/genes12010097
- title:
- Sequencing Red Fox Y Chromosome Fragments to Develop Phylogenetically Informative
+ title: Sequencing Red Fox Y Chromosome Fragments to Develop Phylogenetically Informative
SNP Markers and Glimpse Male-Specific Trans-Pacific Phylogeography
authors:
- - Benjamin N. Sacks
- - Zachary T. Lounsberry
- - Halie M. Rando
- - Kristopher Kluepfel
- - Steven R. Fain
- - Sarah K. Brown
- - Anna V. Kukekova
+ - Benjamin N. Sacks
+ - Zachary T. Lounsberry
+ - Halie M. Rando
+ - Kristopher Kluepfel
+ - Steven R. Fain
+ - Sarah K. Brown
+ - Anna V. Kukekova
publisher: Genes
- date: "2021-01-14"
+ date: '2021-01-14'
link: https://doi.org/gtj95c
image: images/thumbnails/sequencing_red_fox.png
tags:
- - foxes
- - genomes
- - wildlife
+ - foxes
+ - genomes
+ - wildlife
plugin: sources.py
file: sources.yaml
- id: doi:10.1111/age.12755
- title:
- "Four structural variants associated with human\u2010directed sociability\
+ title: "Four structural variants associated with human\u2010directed sociability\
\ in dogs are not found in tame red foxes (Vulpes vulpes)"
authors:
- - Estelle R. Bastounes
- - Halie M. Rando
- - Jennifer L. Johnson
- - Lyudmila N. Trut
- - Benjamin N. Sacks
- - Carlos A. Driscoll
- - Bridgett vonHoldt
- - Anna V. Kukekova
+ - Estelle R. Bastounes
+ - Halie M. Rando
+ - Jennifer L. Johnson
+ - Lyudmila N. Trut
+ - Benjamin N. Sacks
+ - Carlos A. Driscoll
+ - Bridgett vonHoldt
+ - Anna V. Kukekova
publisher: Animal Genetics
- date: "2018-12-10"
+ date: '2018-12-10'
link: https://doi.org/gtj95d
image: images/thumbnails/Four_structural_variants.png
tags:
- - foxes
- - genomes
- - dogs
- - behavior
- - domestication
+ - foxes
+ - genomes
+ - dogs
+ - behavior
+ - domestication
plugin: sources.py
file: sources.yaml
- id: doi:10.1038/s41559-018-0611-6
- title:
- Red fox genome assembly identifies genomic regions associated with tame and
+ title: Red fox genome assembly identifies genomic regions associated with tame and
aggressive behaviours
authors:
- - Anna V. Kukekova
- - Jennifer L. Johnson
- - Xueyan Xiang
- - Shaohong Feng
- - Shiping Liu
- - Halie M. Rando
- - Anastasiya V. Kharlamova
- - Yury Herbeck
- - Natalya A. Serdyukova
- - Zijun Xiong
- - Violetta Beklemischeva
- - Klaus-Peter Koepfli
- - Rimma G. Gulevich
- - Anastasiya V. Vladimirova
- - Jessica P. Hekman
- - Polina L. Perelman
- - Aleksander S. Graphodatsky
- - "Stephen J. O\u2019Brien"
- - Xu Wang
- - Andrew G. Clark
- - Gregory M. Acland
- - Lyudmila N. Trut
- - Guojie Zhang
+ - Anna V. Kukekova
+ - Jennifer L. Johnson
+ - Xueyan Xiang
+ - Shaohong Feng
+ - Shiping Liu
+ - Halie M. Rando
+ - Anastasiya V. Kharlamova
+ - Yury Herbeck
+ - Natalya A. Serdyukova
+ - Zijun Xiong
+ - Violetta Beklemischeva
+ - Klaus-Peter Koepfli
+ - Rimma G. Gulevich
+ - Anastasiya V. Vladimirova
+ - Jessica P. Hekman
+ - Polina L. Perelman
+ - Aleksander S. Graphodatsky
+ - "Stephen J. O\u2019Brien"
+ - Xu Wang
+ - Andrew G. Clark
+ - Gregory M. Acland
+ - Lyudmila N. Trut
+ - Guojie Zhang
publisher: Nature Ecology & Evolution
- date: "2018-08-06"
+ date: '2018-08-06'
link: https://doi.org/csvn
image: images/thumbnails/red_fox_genome_assembly.png
tags:
- - foxes
- - genomes
- - behavior
- - domestication
+ - foxes
+ - genomes
+ - behavior
+ - domestication
plugin: sources.py
file: sources.yaml
- id: doi:10.3390/genes9060308
- title:
- Construction of Red Fox Chromosomal Fragments from the Short-Read Genome
+ title: Construction of Red Fox Chromosomal Fragments from the Short-Read Genome
Assembly
authors:
- - Halie M. Rando
- - "Marta Farr\xE9"
- - Michael P. Robson
- - Naomi B. Won
- - Jennifer L. Johnson
- - Ronak Buch
- - Estelle R. Bastounes
- - Xueyan Xiang
- - Shaohong Feng
- - Shiping Liu
- - Zijun Xiong
- - Jaebum Kim
- - Guojie Zhang
- - Lyudmila N. Trut
- - Denis M. Larkin
- - Anna V. Kukekova
+ - Halie M. Rando
+ - "Marta Farr\xE9"
+ - Michael P. Robson
+ - Naomi B. Won
+ - Jennifer L. Johnson
+ - Ronak Buch
+ - Estelle R. Bastounes
+ - Xueyan Xiang
+ - Shaohong Feng
+ - Shiping Liu
+ - Zijun Xiong
+ - Jaebum Kim
+ - Guojie Zhang
+ - Lyudmila N. Trut
+ - Denis M. Larkin
+ - Anna V. Kukekova
publisher: Genes
- date: "2018-06-20"
+ date: '2018-06-20'
link: https://doi.org/gf4p6z
image: images/thumbnails/red_fox_chromosomal_fragments.png
tags:
- - foxes
- - genomes
- - high-performance computing
+ - foxes
+ - genomes
+ - high-performance computing
plugin: sources.py
file: sources.yaml
- id: doi:10.1002/ece3.3583
- title:
- "Development of a genotype\u2010by\u2010sequencing immunogenetic assay as\
+ title: "Development of a genotype\u2010by\u2010sequencing immunogenetic assay as\
\ exemplified by screening for variation in red fox with and without endemic rabies\
\ exposure"
authors:
- - Michael E. Donaldson
- - Yessica Rico
- - Karsten Hueffer
- - Halie M. Rando
- - Anna V. Kukekova
- - Christopher J. Kyle
+ - Michael E. Donaldson
+ - Yessica Rico
+ - Karsten Hueffer
+ - Halie M. Rando
+ - Anna V. Kukekova
+ - Christopher J. Kyle
publisher: Ecology and Evolution
- date: "2017-12-02"
+ date: '2017-12-02'
link: https://doi.org/gctwp9
image: images/thumbnails/immunogenetic_assay.png
tags:
- - foxes
- - genomes
- - wildlife
+ - foxes
+ - genomes
+ - wildlife
plugin: sources.py
file: sources.yaml
- id: doi:10.1093/jhered/esx066
title: Y-Chromosome Markers for the Red Fox
authors:
- - Halie M Rando
- - Jeremy T Stutchman
- - Estelle R Bastounes
- - Jennifer L Johnson
- - Carlos A Driscoll
- - Christina S Barr
- - Lyudmila N Trut
- - Benjamin N Sacks
- - Anna V Kukekova
+ - Halie M Rando
+ - Jeremy T Stutchman
+ - Estelle R Bastounes
+ - Jennifer L Johnson
+ - Carlos A Driscoll
+ - Christina S Barr
+ - Lyudmila N Trut
+ - Benjamin N Sacks
+ - Anna V Kukekova
publisher: Journal of Heredity
- date: "2017-08-14"
+ date: '2017-08-14'
link: https://doi.org/gbt6tq
image: images/thumbnails/y_chromosome_markers.png
tags:
- - foxes
- - genomes
- - wildlife
+ - foxes
+ - genomes
+ - wildlife
plugin: sources.py
file: sources.yaml
diff --git a/_includes/figure.html b/_includes/figure.html
index a426ff43..155183b8 100644
--- a/_includes/figure.html
+++ b/_includes/figure.html
@@ -9,7 +9,8 @@
0 %}
+
" | remove: "
" }} +Mentioned
+{{ excerpt }}
+ {% if url %} + + {% endif %} {% endif %} + + {% include mentioned-people.html people=info_people %} diff --git a/_includes/post-info.html b/_includes/post-info.html index 10dfb093..593b9587 100644 --- a/_includes/post-info.html +++ b/_includes/post-info.html @@ -40,26 +40,6 @@ {% endunless %} -{% assign tagged_people = include.people | default: empty %} -{% assign tagged_people = tagged_people | join: "," | split: "," | array_filter %} - -{% if tagged_people.size > 0 %} -- Mentioned: - {% for person in tagged_people %} - {% assign member = site.members - | where_exp: "member", "member.slug == person" - | first - %} - {% if member %} - {{ member.name }}{% unless forloop.last %}, {% endunless %} - {% else %} - {{ person }}{% unless forloop.last %}, {% endunless %} - {% endif %} - {% endfor %} -
-{% endif %} - {% if include.tags %} {% include tags.html tags=include.tags link="news" %} {% endif %} diff --git a/_layouts/post.html b/_layouts/post.html index f4bbe277..be5558dc 100644 --- a/_layouts/post.html +++ b/_layouts/post.html @@ -20,6 +20,8 @@