From 6f00ce04e47cbff81abd3333c7f39972a3d27a2f Mon Sep 17 00:00:00 2001 From: Stephen Turner Date: Wed, 18 Apr 2018 15:23:26 -0400 Subject: [PATCH] get more sequences back from filtering 250->270 --- workshops/microbiome/README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/workshops/microbiome/README.md b/workshops/microbiome/README.md index 2397115..fe3d1f2 100644 --- a/workshops/microbiome/README.md +++ b/workshops/microbiome/README.md @@ -135,7 +135,7 @@ There are some false positives from the merging step, some reads after merging a In this step, we shall remove low quality amplicons. We will filter reads based on expected error rates, filter longer than expected amplicons, and convert the reads to fasta format. cd ${WORKDIR}/qc/ - vsearch --fastq_filter ${WORKDIR}/mergepairs/SRR5972053_merged.fastq --fastq_maxee 1 --fastq_maxlen 250 --fastaout SRR5972053_merged_qc.fasta + vsearch --fastq_filter ${WORKDIR}/mergepairs/SRR5972053_merged.fastq --fastq_maxee 1 --fastq_maxlen 270 --fastaout SRR5972053_merged_qc.fasta **_Relabel_**\