public-R-HistogramZoo/NAMESPACE at main · uclahs-cds/public-R-HistogramZoo · GitHub

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# Generated by roxygen2: do not edit by hand

S3method("+",Histogram)
S3method("[",GenomicHistogram)
S3method("[",Histogram)
S3method(create_coverageplot,Histogram)
S3method(create_coverageplot,HistogramFit)
S3method(create_histogram,Histogram)
S3method(create_residualplot,HistogramFit)
S3method(density,Histogram)
S3method(find_all_meaningful_gap,Histogram)
S3method(find_all_meaningful_gap,numeric)
S3method(find_bin_width,GenomicHistogram)
S3method(find_bin_width,Histogram)
S3method(find_change_points,Histogram)
S3method(find_change_points,numeric)
S3method(find_consecutive_threshold,Histogram)
S3method(find_consecutive_threshold,numeric)
S3method(find_local_optima,Histogram)
S3method(find_local_optima,numeric)
S3method(find_midpoint,GenomicHistogram)
S3method(find_midpoint,Histogram)
S3method(fit_distributions,GenomicHistogram)
S3method(fit_distributions,Histogram)
S3method(fit_distributions,numeric)
S3method(fit_distributions,table)
S3method(fit_uniform,GenomicHistogram)
S3method(fit_uniform,Histogram)
S3method(fit_uniform,numeric)
S3method(fit_uniform,table)
S3method(ftc,Histogram)
S3method(ftc,numeric)
S3method(identify_uniform_segment,GenomicHistogram)
S3method(identify_uniform_segment,Histogram)
S3method(identify_uniform_segment,numeric)
S3method(length,Histogram)
S3method(meaningful_gaps_local,Histogram)
S3method(meaningful_gaps_local,numeric)
S3method(print,GenomicHistogram)
S3method(print,HZModelFit)
S3method(print,Histogram)
S3method(print,HistogramFit)
S3method(reassign_region_id,GenomicHistogram)
S3method(reassign_region_id,Histogram)
S3method(summarize_results,GenomicHistogram)
S3method(summarize_results,Histogram)
S3method(weighted.mean,Histogram)
S3method(weighted.sd,Histogram)
S3method(weighted.sd,default)
S3method(weighted.skewness,Histogram)
S3method(weighted.skewness,default)
S3method(weighted.var,Histogram)
S3method(weighted.var,default)
export(GTF_to_GRangesList)
export(GenomicHistogram)
export(Histogram)
export(bigWig_to_histogram)
export(bin_log_likelihood)
export(common.sim.legend)
export(coverage_to_histogram)
export(create_coverageplot)
export(create_histogram)
export(create_layerplot)
export(create_residualplot)
export(create_trackplot)
export(dgamma)
export(dgamma_flip)
export(dtgamma)
export(dtgamma_flip)
export(find_all_meaningful_gap)
export(find_bin_width)
export(find_change_points)
export(find_consecutive_threshold)
export(find_consensus_model)
export(find_local_optima)
export(find_midpoint)
export(fit_distributions)
export(fit_uniform)
export(ftc)
export(generate_xlabels)
export(genome_BED_to_histogram)
export(identify_uniform_segment)
export(index_to_start_end)
export(meaningful_gaps_local)
export(metric.histogram.dist)
export(observations_to_histogram)
export(overlap_size)
export(pgamma)
export(pgamma_flip)
export(ptgamma)
export(ptgamma_flip)
export(qgamma)
export(qgamma_flip)
export(qtgamma)
export(qtgamma_flip)
export(reassign_region_id)
export(remove_max_gaps)
export(reset_consecutive_intervals)
export(rgamma)
export(rgamma_flip)
export(rtgamma)
export(rtgamma_flip)
export(scale_model_params)
export(segment_and_fit)
export(segment_prob)
export(sim.plot.distribution.accuracy)
export(sim.plot.parameter.accuracy)
export(sim.plot.segment.cor)
export(sim.plot.segment.eval)
export(summarize_results)
export(transcript_BED_to_histogram)
export(uniform_mle)
export(union_size)
export(weighted.sd)
export(weighted.skewness)
export(weighted.var)
import(Metrics)
import(data.table)
importFrom(DEoptim,DEoptim)