Singularity.05131402

Bootstrap: docker
From: ubuntu:16.04

%post
    apt-get -y update
    apt-get -y install wget
    apt-get -y install apt-transport-https
# Next lines require to download Intel Python
    wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB
    apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB
    wget https://apt.repos.intel.com/setup/intelproducts.list -O /etc/apt/sources.list.d/intelproducts.list
    apt-get -y update
# This prevents some questions being asked
    export DEBIAN_FRONTEND=noninteractive
    apt-get install dialog
date
# Intalling Fortran also give us C.    
    apt install -y gfortran
# Installing g++ make installing openmpi easier
    apt install -y g++
    apt install -y make
date

# Install editors
  apt install -y vim
  apt install -y nano


# The next two lines install a perl module needed 
# by the backup app installed below.
    apt install -y cpanminus
    cpan install Term::ANSIColor


date    
%environment
    export LC_ALL=C
# Python order is important if you want both 3 and 2  
# because there is "python" under intelpython3 that is
# actually python3
    export PATH=/opt/intel/intelpython3/bin:$PATH
   #export PATH=/opt/intel/intelpython2/bin:$PATH
    export PATH=/opt/install:$PATH
    export PATH=/opt/examples:$PATH
    export PATH=/usr/local/bin:$PATH
    export LD_LIBRARY_PATH=/usr/local/lib:$LD_LIBRARY_PATH
    export export R_LIBS=/opt/install/rlibs/
    export DO_IMPI=/opt/intel/impi/2019.3.199/intel64/bin/mpivars.sh

%labels
    Author thkphd