[SYN] Running jobs at Ocotillo to compute topo_ave_knockout for syn groups

[thyamu]

0-a-1. Open ==> cluster/generating_batch_files/knockout_topo_ave/seed_array_topo_ave
0-a-2. Check ==> argument number is 4 as "level group $runID [ratio]"
0-b-1. Check ==> cluster/generating_batch_files/knockout_topo_ave/seed_array_topo_ave_missing
0-b-2. Check ==> argument number is 4 as "level group $runID [ratio]"

1. Open ==> cluster/generating_batch_files/knockout_topo_ave/array_batch
2. Check ==> runScriptName="topo_ave_knockout_syn.py"
3. Change runLevel, runGroup, and nbrTotal according to groups (cf. mgmnet/syn_nets.py)
4. Run ./array_batch
5. ../../
6. Run sbatch topo_knockout_[system_name].batch

• syn_archaea

• topo_knockout_sia_1.batch

• topo_knockout_sia_2.batch

• syn_bacteria

• topo_knockout_sib_1.batch

• topo_knockout_sib_2.batch

• syn_eukarya

• topo_knockout_sie_1.batch

• syn_all

• topo_knockout_siall_1.batch

• topo_knockout_siall_2.batch

• topo_knockout_siall_3.batch

• topo_knockout_siall_4.batch

• topo_knockout_siall_5.batch

7. @Local, Under results_cluster/topo_ave_knockout/ ==> rsync -avz hkim78@ocotillo1.a2c2.asu.edu:research/MGMNet/results_cluster/topo_ave_knockout/syn .
8. @Local ==> collecting_knockout_topo_ave.py syn 0.1
9. @Local git push, Under cluster/missing/topo_ave_knockout/
10. git pull, Under cluster/missing/
11. Open ==> cluster/generating_batch_files/knockout_topo_ave/array_batch_missing
12. Check ==> runScriptName="topo_ave_knockout_syn.py"
13. Change runLevel, runGroup, runSystemName and nbrSubmit according to groups (cf. mgmnet/syn_nets.py)
14. Run ./array_batch_matching
15. ../../
16. Run sbatch missing_topo_knockout_[system_name].batch