- Breaking change: Require R >= 4.1
- No other user-visible changes.
- Internal changes:
- Replace long-deprecated
filter(across())withif_all()to be {dplyr} 1.2.0-compatible (#3, thanks to @DavisVaughan). - Split code into multiple files.
- Use modern tidyselect, pipe, and anonymous functions.
- Add some unit tests.
- Replace long-deprecated
- Separately call tidyverse packages
- Update remaining references to manuscript
- Add reference to accompanying manuscript on bioRxiv
- Expand documentation for
diagnose_models().
- Bioconductor limma dependency added for
remotes::install_github() - Code review, updates to curly-curly, and tidyverse style changes, thanks to @tgerke
- Compose formula in
batchrq()usingstats::reformulate().
- Consistently allow for missing biomarker and confounder values as well as empty batches.
- Add parameter
quantreg_methodto allow for choosing the Barrodale--Roberts algorithm (br). The default remainsfn. - Rename parameters
truncatetoipw_truncate;tautoquantreg_tauto indicate their scope.
- Remove old version of quantile regression without standardization.
- This is the first released version of batchtma.